Gene Ssed_3479 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3479 
SymbolleuS 
ID5613276 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp4236355 
End bp4238946 
Gene Length2592 bp 
Protein Length863 aa 
Translation table11 
GC content47% 
IMG OID640934427 
Productleucyl-tRNA synthetase 
Protein accessionYP_001475211 
Protein GI157376611 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0495] Leucyl-tRNA synthetase 
TIGRFAM ID[TIGR00396] leucyl-tRNA synthetase, eubacterial and mitochondrial family 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000160913 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCAAGAGC AATATAAACC TTCAGAAATT GAAGCTAAAG TGCAGCAGCA CTGGCAAGAC 
AAAAAAACAT TTGAAGTCAC CGAAGACGAA AACAAAGAGA AATTCTACTG TCTCTCTATG
TTTCCTTACC CTTCTGGCCG GCTACACATG GGTCATGTTC GTAACTACAC CATAGGTGAC
GTTGTCGCTC GTTACCAGCG ACTTCAGGGA AAAAATGTAT TACAGCCTAT AGGTTGGGAC
TCATTTGGTC TTCCTGCTGA AAACGCTGCG ATTAAAAACA ACACAGCCCC GGCGCCTTGG
ACATACGAAA ACATCGATTA CATGAAAAAC CAGCTGAAAA TGCTGGGTTT CGGTTATGAC
TGGAGCCGTG AGATCGCAAC CTGTACCCCT GAGTATTATC GTTGGGAGCA GTGGTTTTTC
ACTAAGCTTT TTGAAAAAGG CTTAGTCTAT AAGAAAACGG CTTCGGTCAA CTGGTGTCCG
AACGATGAAA CCGTTTTGGC TAACGAACAG GTTATCGATG GTTGCTGCTG GCGTTGTGAT
ACAACGGTAG AGCAAAAAGA GATCCCACAG TGGTTTATCA AGATCACTGA GTATGCAGAC
GAACTCCTTA AAGATATCGA TCAGTTAGAC GAATGGCCTG AGCAAGTTAA GACCATGCAA
CGTAACTGGA TTGGACGCAG CGAAGGCATC GAGATGACTT TCGGCGTTGT CGATAGCGAA
GAGACATTCG ATATCTACAC CACGCGTCCG GATACTGTAA TGGGTGTAAC TTATGTTGCC
ATTGCAGCAG GTCACCCGCT TGCAGAAAAA GCAGCAGCAA ACAACTCAGA GCTTTCCGAC
TTTATCGAAG AGTGTAAAAA CGCCGATACT ACCGAAGCCG CTATGGCTGC GATGGAAAAG
AAAGGTGTTG CTACTGGTCT GTATGCCACT CATCCACTAA CCGGTAAGCA AGTACCTATC
TGGGCCGCTA ACTTCGTATT GATGAACTAC GGTACAGGCG CTGTAATGTC AGTCCCAGCT
CACGATCAAC GTGATTATGA GTTTGCGACT AAATACGGCT TAGCTATCGA AGGCGTTATT
AAGCCAAGCG ATAGCGACTT AGACATCAGC GAAGAAGCTT ACACAGAAAA GGGCGTATTG
TTTAACTCAG GCGACTCTTT TCCCGAGCTG GATGGCCTGG ACTTCCAAGA CGCTTTTGAT
GCCATCGATG CCAAGCTATC GAGTGAAGGC AAGGGTAAGC GTCAGGTAAA CTTCCGTTTA
CGCGACTGGG GTGTCTCCCG TCAGCGTTAT TGGGGGGCAC CTATCCCTAT GGTCACGCTT
GCTGACGGTA CAGTCGTTCC TACACCGGAA GATCAACTGC CTGTCATTTT GCCTGAAGAT
GTGGTCATGG ATGGAATCCA AAGCCCAATC AAGGCTGACA AAGAGTGGGC TAAAACTCAG
ATTAATGGCC AGGAAGCGTT CAGAGAGACA GATACCTTCG ACACTTTTAT GGAGTCATCT
TGGTATTATG CGCGTTACTG TAGTCCACAT GCCGATGAGA TGTTAGACCC GGCTAAGGCT
AACTACTGGC TGCCGGTAGA TCAGTATATC GGTGGTATTG AGCATGCGTG TATGCATCTG
CTTTACTTCC GTTTCTTCCA TAAATTACTG CGTGATATTG GTTTAGTTAA CTCTGATGAG
CCAGCGAAGC GTCTATTGAC TCAAGGTATG GTATTGGCCG ATGCTTTCTA CTATAACAAC
GAGAAAGGCG CGCGGGTTTG GGTTGCTCCG TCAGATGTGA CCGTTCAGGA AACTGACGAG
AAAGGCCGCA TCCAAAAAGC CGTTGACAGC GAAGGTCATG AGCTTGTCTA TACCGGTATG
AGCAAGATGT CTAAGTCTAA AAACAACGGC ATTGATCCTC AAGTGATGGT AGATAAGTAC
GGCGCCGACA CCGTGCGTCT GTTTATGATG TTTGCCGCGC CACCTGAGCT GACGCTTGAA
TGGCAAGAGT CGAGTGTTGA GGGTGCACAT CGCTTTATTA AGCGTTTGTG GAAAGTCGCC
CATGACCATG TTGCTAAAGG CGCCACTGCT CCGTTAGACG TTAAAACTCT CGATACTAAA
CAGAAAGAGC TACGTCGTGA ACTGCACAAG ACCATAGTTA AGGTCGGTGA TGATATTGAA
CGTCGCCAAA TGTTCAATAC AGCCATCGCC TCCGTGATGG AGCTGATGAA TCGTCTTCAG
AAAGCACCAA CTGAAACTCA GCAAGACCGT GCTCTGATGC AAGAAGCACT TTCTGCAGTT
GTCCGTCTGC TTTACCCTAT CATTCCACAC ACTAGCTTTA GCCTGTGGAA TGATCTTGGG
AATGAAGAGA ACATCGAAGA TGTGCGTTGG CCTGAAGCCG ATCAGTCTGC ACTCGTTGAA
GATAGCAAGC TAATTATCGT TCAAGTCAAC GGTAAACTGC GTGCCAAGAT CACCGTTCCA
GCCGATGCGA CTAAAGAGGT TGTTGAGGAA CAAGGTTTTG CAGAAGAGGG TGTGATTAAA
CATACCGAAG GTAAAACCGT TCGCAAAGTT ATCTATGTAC CGGGCAAATT GCTCAACATC
GTGGCTAACT AG
 
Protein sequence
MQEQYKPSEI EAKVQQHWQD KKTFEVTEDE NKEKFYCLSM FPYPSGRLHM GHVRNYTIGD 
VVARYQRLQG KNVLQPIGWD SFGLPAENAA IKNNTAPAPW TYENIDYMKN QLKMLGFGYD
WSREIATCTP EYYRWEQWFF TKLFEKGLVY KKTASVNWCP NDETVLANEQ VIDGCCWRCD
TTVEQKEIPQ WFIKITEYAD ELLKDIDQLD EWPEQVKTMQ RNWIGRSEGI EMTFGVVDSE
ETFDIYTTRP DTVMGVTYVA IAAGHPLAEK AAANNSELSD FIEECKNADT TEAAMAAMEK
KGVATGLYAT HPLTGKQVPI WAANFVLMNY GTGAVMSVPA HDQRDYEFAT KYGLAIEGVI
KPSDSDLDIS EEAYTEKGVL FNSGDSFPEL DGLDFQDAFD AIDAKLSSEG KGKRQVNFRL
RDWGVSRQRY WGAPIPMVTL ADGTVVPTPE DQLPVILPED VVMDGIQSPI KADKEWAKTQ
INGQEAFRET DTFDTFMESS WYYARYCSPH ADEMLDPAKA NYWLPVDQYI GGIEHACMHL
LYFRFFHKLL RDIGLVNSDE PAKRLLTQGM VLADAFYYNN EKGARVWVAP SDVTVQETDE
KGRIQKAVDS EGHELVYTGM SKMSKSKNNG IDPQVMVDKY GADTVRLFMM FAAPPELTLE
WQESSVEGAH RFIKRLWKVA HDHVAKGATA PLDVKTLDTK QKELRRELHK TIVKVGDDIE
RRQMFNTAIA SVMELMNRLQ KAPTETQQDR ALMQEALSAV VRLLYPIIPH TSFSLWNDLG
NEENIEDVRW PEADQSALVE DSKLIIVQVN GKLRAKITVP ADATKEVVEE QGFAEEGVIK
HTEGKTVRKV IYVPGKLLNI VAN