| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3476 |
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| Symbol | |
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| ID | 5613362 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4232424 |
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| End bp | 4233320 |
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| Gene Length | 897 bp |
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| Protein Length | 298 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640934424 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001475208 |
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| Protein GI | 157376608 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00597173 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGTACGATA TTTTACCTGT TTTAGGAAGT GGTCTCGTTA TTTCCGGCGC CCTTTTGCTG
GCAATGGCTA TCGCACCGGT ATGGAAAATA GTTCGGCAGT TACCAACTGG CGGATTACGG
TACAGCTGGG GGTTTCTTAT CCTGCTGATC CTGATTTTCA TTGCAGGCTA TGTTATATAC
GCAAAGTTCA GTCCGGTTCA ATTTTCTCAA CTCTTCGATC TGGTCGTGCC TATCATCTTC
TTTGGCGGTG CTATTTTTGT TTTTGTTGTC TGTAGCCTCT CCCTCAGAAC CACCAGAGAT
ATCATGCAGA ACTACGCCCT CAAACAGGAA AATATCACCG ACTCACTGAT GGGGATCTTT
AACCGTCGCT ACCTGGATCG CCGACTCAAA GATGAGACAG AAAGGGCATT AAATTACTCT
CAACCGCTCT CCATCTTTCT AATCGACATC GATCATTTCA AGCAGGTCAA TGATAACTAT
GGGCATCAGG TTGGTGACCT GGTGTTGAAA AATATTGCCC AACTGATCAA GCATTCGCTC
AGAGAGTCTG ATGTGCTTGC CCGTTTTGGT GGTGAAGAGT TTGTCGTCAT TCTCCCTCGG
ACCAAGGATT CGACATCCTA TACTCTCGCT GAACGACTCA GGCATGTCGT GGAAGACTTT
CAGCTAACGC TACCAGAAGA GTCTGATAAA GACTCACTAT CGATATCAGT CACTGTGAGT
ATTGGTGTCG CCGGGCTGAA TGCTCAGTGT AAAGACTGCC AATGTCTTAT TGAAAATGCA
GACAGAGCAC TCTATCAGGC AAAACGAAAT GGCCGAAACC AGGTGATAAC GAGTAAGAGT
GGCAAAACAG ACACAAAGAT GAATGGGGGC CTGATTGGAG CCCCTGAGCC ACGATAG
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| Protein sequence | MYDILPVLGS GLVISGALLL AMAIAPVWKI VRQLPTGGLR YSWGFLILLI LIFIAGYVIY
AKFSPVQFSQ LFDLVVPIIF FGGAIFVFVV CSLSLRTTRD IMQNYALKQE NITDSLMGIF
NRRYLDRRLK DETERALNYS QPLSIFLIDI DHFKQVNDNY GHQVGDLVLK NIAQLIKHSL
RESDVLARFG GEEFVVILPR TKDSTSYTLA ERLRHVVEDF QLTLPEESDK DSLSISVTVS
IGVAGLNAQC KDCQCLIENA DRALYQAKRN GRNQVITSKS GKTDTKMNGG LIGAPEPR
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