| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3473 |
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| Symbol | |
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| ID | 5613463 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4229198 |
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| End bp | 4229674 |
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| Gene Length | 477 bp |
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| Protein Length | 158 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640934421 |
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| Product | putative metalloprotease |
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| Protein accession | YP_001475205 |
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| Protein GI | 157376605 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0319] Predicted metal-dependent hydrolase |
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| TIGRFAM ID | [TIGR00043] metalloprotein, YbeY/UPF0054 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.162228 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0246988 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACACTA GCCAAGCAGA AATTGAATTA GATCTCGATC TACAGCTCGC TATAGAAAAT
AGTCAGTTAC CGAGCAAACA AAATTTTGAA CTTTGGGTGC GTACAGCACT CCCAAAGACT
ATGGCTGAAG CCGAATTAAC GATTAGAATC GTCGATGAAG CTGAGAGTCA GGAGTTAAAC
TCGACATACA GAGGAAAAGA TAAACCAACA AATGTGCTAT CTTTTCCTTT TGAGGCGCCA
CCGGAGATTG AAATCCCACT ATTAGGCGAT TTAATAATCT GTGCACCCGT TGTCGAACTC
GAAGCATTGC AGCAAAATAA ACCCCTACAA GCCCACTGGG CTCACATGGT TGTACATGGT
TGTCTGCATC TGCTAGGGTA TGATCATATT AACGATGCCG AAGCCGAAGA GATGGAGTCT
TTAGAGACTC AACTAGTTGA AAGTTTAGGT TTTAACAATC CTTACAAGGA GCAATAA
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| Protein sequence | MNTSQAEIEL DLDLQLAIEN SQLPSKQNFE LWVRTALPKT MAEAELTIRI VDEAESQELN
STYRGKDKPT NVLSFPFEAP PEIEIPLLGD LIICAPVVEL EALQQNKPLQ AHWAHMVVHG
CLHLLGYDHI NDAEAEEMES LETQLVESLG FNNPYKEQ
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