Gene Ssed_3469 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3469 
Symbol 
ID5613553 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp4224650 
End bp4225858 
Gene Length1209 bp 
Protein Length402 aa 
Translation table11 
GC content47% 
IMG OID640934417 
ProductUbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase 
Protein accessionYP_001475201 
Protein GI157376601 
COG category[C] Energy production and conversion
[H] Coenzyme transport and metabolism 
COG ID[COG0654] 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases 
TIGRFAM ID[TIGR01988] Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000196626 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.221486 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATGAAA CCCTGGTGAG TCAGTCTCAA ATGAAAGCTG TAAAAAAAGA TGTTGTCATC 
GTTGGTGGAG GGATGGTCGG CGCCGCTGCG GCCATAGGGC TGGCACAACA GGGACTCAAT
GTTGCTGTGG TTGAAGCCTA TGCACCTAAG CCATATAGCA GTGAACAGCC TATAGATATC
AGGGTGTCTG CTGTGAGTCT GGCATCGGAG CAGTTACTCG AACGCCTTGG GGCGCTTAAG
AGTCTTAGCG TGATGCGTCG AGCCGCTTAT CTTGGATTAG AGACTTGGGA GTTAGATGGT
TTCATCACTC GCTTTCATGC GGACCAGGTC GGTGTTCCAT ATCTGGGTCA TATTATTGAG
AATAGACTGA TACAGCTTGC GCTTTGGGAG CAGTTTGACT CATTTGATAA TATTGAACTC
TTTTGTCCGG CCAAGGTTGA GCAATTTATT CGCCTGGAAG AGGGAGTGAC AGTAACATTA
GATAATGGTG TCTCACTCGA TACTAAATTA CTTGTCGGCG CCGATGGGGC AAACTCTCAG
GTAAGAACCT GGGCTGGAAT AGGTTTGACG GGCTGGGATT ACGCACAATC TGCTATGTTA
ATTAACATCA AGACAGATTG CGCTCAACAG GATGTGACCT GGCAGCAATT TACCCCTCAA
GGACCTCGCT CTCTTCTGCC TTTGCCGGGA AATAATGCCT CTTTGGTGTG GTATGACGAT
GCGAGTCGCA TTGCGCAGCT AGCGCAATTA AGTAATACGG CTCTCGCACA ACAGATAAAA
CAGCACTTTC CAGCGCGTCT GGACAGACAG TTTGAAGTTT TGCAAAAAGG CAGTTTTAAG
CTGACGAGGC GTCATGCGCA ATCTTATTTC ACCGACAATC TGGTTATCCT GGGCGATGCG
GCGCATACGA TTAATCCACT AGCCGGGCAG GGGGTTAACA TTGGCTTTAA AGATGTCGAT
GCGTTGATCT CAACTGTTTC AGAAAAAATA AGCCAAGGCG AACCTTGGTG GGAAGAACCG
GCATTACGTT CATATCAAGA AAGCCGTTAT AAAGATAACC AGTTGATGAT GTCGGCAATG
GATCTCTTCT ATGCTGGATT TAGTAATGAG CTTTTGCCAT TAAAGGTGCT GCGTAATGCG
GCATTAAAAG TGGCAAATAT AGACTCTCCT GTGAAAAAGT ATGTGCTTAA GTATGCCTTG
GGTTTGTAA
 
Protein sequence
MDETLVSQSQ MKAVKKDVVI VGGGMVGAAA AIGLAQQGLN VAVVEAYAPK PYSSEQPIDI 
RVSAVSLASE QLLERLGALK SLSVMRRAAY LGLETWELDG FITRFHADQV GVPYLGHIIE
NRLIQLALWE QFDSFDNIEL FCPAKVEQFI RLEEGVTVTL DNGVSLDTKL LVGADGANSQ
VRTWAGIGLT GWDYAQSAML INIKTDCAQQ DVTWQQFTPQ GPRSLLPLPG NNASLVWYDD
ASRIAQLAQL SNTALAQQIK QHFPARLDRQ FEVLQKGSFK LTRRHAQSYF TDNLVILGDA
AHTINPLAGQ GVNIGFKDVD ALISTVSEKI SQGEPWWEEP ALRSYQESRY KDNQLMMSAM
DLFYAGFSNE LLPLKVLRNA ALKVANIDSP VKKYVLKYAL GL