Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3469 |
Symbol | |
ID | 5613553 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 4224650 |
End bp | 4225858 |
Gene Length | 1209 bp |
Protein Length | 402 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640934417 |
Product | UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase |
Protein accession | YP_001475201 |
Protein GI | 157376601 |
COG category | [C] Energy production and conversion [H] Coenzyme transport and metabolism |
COG ID | [COG0654] 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases |
TIGRFAM ID | [TIGR01988] Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000000196626 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.221486 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATGAAA CCCTGGTGAG TCAGTCTCAA ATGAAAGCTG TAAAAAAAGA TGTTGTCATC GTTGGTGGAG GGATGGTCGG CGCCGCTGCG GCCATAGGGC TGGCACAACA GGGACTCAAT GTTGCTGTGG TTGAAGCCTA TGCACCTAAG CCATATAGCA GTGAACAGCC TATAGATATC AGGGTGTCTG CTGTGAGTCT GGCATCGGAG CAGTTACTCG AACGCCTTGG GGCGCTTAAG AGTCTTAGCG TGATGCGTCG AGCCGCTTAT CTTGGATTAG AGACTTGGGA GTTAGATGGT TTCATCACTC GCTTTCATGC GGACCAGGTC GGTGTTCCAT ATCTGGGTCA TATTATTGAG AATAGACTGA TACAGCTTGC GCTTTGGGAG CAGTTTGACT CATTTGATAA TATTGAACTC TTTTGTCCGG CCAAGGTTGA GCAATTTATT CGCCTGGAAG AGGGAGTGAC AGTAACATTA GATAATGGTG TCTCACTCGA TACTAAATTA CTTGTCGGCG CCGATGGGGC AAACTCTCAG GTAAGAACCT GGGCTGGAAT AGGTTTGACG GGCTGGGATT ACGCACAATC TGCTATGTTA ATTAACATCA AGACAGATTG CGCTCAACAG GATGTGACCT GGCAGCAATT TACCCCTCAA GGACCTCGCT CTCTTCTGCC TTTGCCGGGA AATAATGCCT CTTTGGTGTG GTATGACGAT GCGAGTCGCA TTGCGCAGCT AGCGCAATTA AGTAATACGG CTCTCGCACA ACAGATAAAA CAGCACTTTC CAGCGCGTCT GGACAGACAG TTTGAAGTTT TGCAAAAAGG CAGTTTTAAG CTGACGAGGC GTCATGCGCA ATCTTATTTC ACCGACAATC TGGTTATCCT GGGCGATGCG GCGCATACGA TTAATCCACT AGCCGGGCAG GGGGTTAACA TTGGCTTTAA AGATGTCGAT GCGTTGATCT CAACTGTTTC AGAAAAAATA AGCCAAGGCG AACCTTGGTG GGAAGAACCG GCATTACGTT CATATCAAGA AAGCCGTTAT AAAGATAACC AGTTGATGAT GTCGGCAATG GATCTCTTCT ATGCTGGATT TAGTAATGAG CTTTTGCCAT TAAAGGTGCT GCGTAATGCG GCATTAAAAG TGGCAAATAT AGACTCTCCT GTGAAAAAGT ATGTGCTTAA GTATGCCTTG GGTTTGTAA
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Protein sequence | MDETLVSQSQ MKAVKKDVVI VGGGMVGAAA AIGLAQQGLN VAVVEAYAPK PYSSEQPIDI RVSAVSLASE QLLERLGALK SLSVMRRAAY LGLETWELDG FITRFHADQV GVPYLGHIIE NRLIQLALWE QFDSFDNIEL FCPAKVEQFI RLEEGVTVTL DNGVSLDTKL LVGADGANSQ VRTWAGIGLT GWDYAQSAML INIKTDCAQQ DVTWQQFTPQ GPRSLLPLPG NNASLVWYDD ASRIAQLAQL SNTALAQQIK QHFPARLDRQ FEVLQKGSFK LTRRHAQSYF TDNLVILGDA AHTINPLAGQ GVNIGFKDVD ALISTVSEKI SQGEPWWEEP ALRSYQESRY KDNQLMMSAM DLFYAGFSNE LLPLKVLRNA ALKVANIDSP VKKYVLKYAL GL
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