| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3468 |
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| Symbol | |
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| ID | 5613552 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4223761 |
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| End bp | 4224345 |
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| Gene Length | 585 bp |
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| Protein Length | 194 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640934416 |
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| Product | peptidyl-tRNA hydrolase |
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| Protein accession | YP_001475200 |
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| Protein GI | 157376600 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0193] Peptidyl-tRNA hydrolase |
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| TIGRFAM ID | [TIGR00447] peptidyl-tRNA hydrolase |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000174641 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.19866 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGTAACA TTAAACTGAT AGTTGGGCTC GCAAATCCTG GCGATAAATA CGCTCAGACC
AGGCACAATG CGGGGGCTTG GTACGTACAA GAGTTGGCGA GAGTGTGCGG TGCCACGCTC
GTAGCAGATA GCAAATATTA TGGGTTAACA GCAAGAGTGA CATTGCACGG GAAAGATGTT
CGTTTACTCA TCCCGTCAAC TTTTATGAAC CTAAGTGGGA AATCGGTCGG TGCTTTAGCC
AACTTTTTTC GCATAGAGCC TGAAGAGATC CTGGTTGCTC ATGATGAGCT TGATATGCAA
CCCGGCGTAG CTAAGTTTAA ACTTGGTGGC GGTCACGGCG GGCATAATGG CCTGAAAGAT
ATTATTGCTA AGCTTGCCAA CAATAAAGGT TTCTATCGAC TCAGGATCGG TATTGGTCAC
CCTGGTGATA AAAATCAAGT GAGCAATTAT GTATTAGGCA AAGCGCCGGC ATCAGAACAA
ACCTTGATAG AAACGGTGAT TGATGAAGCC GTGAGGTCGA CTGAGTTGCT ATTTAATGAA
GATATGGCGA AAGCAATGCA TAGATTGCAC TCTTTCAAAG GCTAG
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| Protein sequence | MSNIKLIVGL ANPGDKYAQT RHNAGAWYVQ ELARVCGATL VADSKYYGLT ARVTLHGKDV
RLLIPSTFMN LSGKSVGALA NFFRIEPEEI LVAHDELDMQ PGVAKFKLGG GHGGHNGLKD
IIAKLANNKG FYRLRIGIGH PGDKNQVSNY VLGKAPASEQ TLIETVIDEA VRSTELLFNE
DMAKAMHRLH SFKG
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