| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3466 |
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| Symbol | |
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| ID | 5613532 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4217288 |
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| End bp | 4219645 |
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| Gene Length | 2358 bp |
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| Protein Length | 785 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934406 |
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| Product | hypothetical protein |
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| Protein accession | YP_001475198 |
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| Protein GI | 157376598 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR03507] decaheme c-type cytochrome, OmcA/MtrC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.724503 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACGAT TCGATATGAA GGTTGCTACA TTAGCAACAT TAATCGGTCT GGCACTTTCC
GGCTGTAGTG GCGATGATGG TAAAGATGGA GTAGATGGCA ATGACGGCAC GCCAGGTACT
CCGGCCATTA TTGTTGCAAC CAGTGCGCAA AGTTTGAATG TGACAGTCGA AAAGGTGGCC
ATCGCCAGTG ACTCTGCTGT CACTTTTATG GTGACCAATG AGAAAGACTT ACCTGTCGTT
GGCTTGAGCC ATTTCGGCTT TATGCTCTCC GGCCTTGAGG AAGGCGAAAA TGGTGATGCC
AATAACTGGA AACTACTGAG CTCAGAATCG TGTCCGGACA GCAAATATGC CAAGTGTGGC
ACGCTGACCG ATAATGGTGA CGGTACTTAT AATTACCACT TCCTTAAAGA TGTGACTGCT
GAGCCAGCAT TTACTATCAA CGATGACAAG ACACTGCGTC TGATGGTCAA TACCGGTGGT
GAAAAAGTAG GGGCTTCAGA GCTGCCTTAC GCCAATATGA ACTATGATTT CCGTGCTCAG
GGCGAAACCC CTCTGTACAC CAAGAATGTG GTCAACAACC AGAACTGTGA AAGTTGTCAT
GATGATTTTA CCATTCATGG CGGACATTAC ACTGAAGTGG AGACTTGTGT ATCTTGTCAT
ACAGACAACA AGGTCAGCAG CAGTGAAAAA GTGTTCCCAA TGCTGGCTCA TAAGGCTCAC
ATAGGTGTTA TCTCAGCACC AGTCGGTGGT TGTGATAACT GTCACTCTGA AAATGAGCAG
GCGACAGATT ACGCCAACTG GAAGAGCGTA CCTACCCAAG AAACATGTAT TACTTGTCAT
ACAGACGTCA ACTTCAAGGA AGGCGTTGGC CACTGGCCGT ATCAGGACAA TGCACAATGT
GCCAATTGTC ACACGCCTGA TACCCTCGAG ATGGTGCATT TGTCTACCTA TAAGGGACAA
AACGAGCGCC GTAACAATCT TCACCTGACC GTGACCGAAG CCAAGATGGT TGATGCTCCG
GAAGCAAAAG CCAACATCGA CGCCAACCTG GATACCGATA AGACTGGCTA TGTACAGCTG
ACAGTCGACA TTCTGGACAA AGATGGCATC ACGCGTAATG AGCAGTTAGA TTTGGTTAAG
TACATGTACT ACGCCGAGTT CTATATCAAC TGGGGTGGCC AGGATATGGG CATGGAGCGT
GGTAAGGTAC TGCGTGTTCA TACCAACAAA GAAAACTTCC CGGGTTATGT TGATGAGCCA
ATCGTGCTTA ACTATGAAAA TGGTAAGACA ACGTTTGAAA TTGGTCCATT CGATCTTGAG
GATGACTTCG ATGGTGACTT GAACGATAGT TACGGCATGG TGACGCCGCG TATCTGGTTC
TGTATCGACA AAGATGGTGA AACAATCCAG GACTGTGATG GCAAAACTGA TTGGAGTAAC
GGTGCGGCTG GTTATAACTG GCAACACTTC TTCAATAAGG AAGGCATGCT GGAAGAGCGT
CCACGTCGTC AGATCGTGAC CAATGAGCTG TGTGGTGATT GTCATGGTAC GACTACCTCA
GAAGATGGCT TCGTACAGAT GACTCTTAAC TGTCGTAGCT GTCACTCTGT GGTCAAGAAC
GATAGTACCT ACTTCGGTAC CACTTGTGCT TCGGGCTCGG TCGATTCCGA TGGCGATGGT
GCTTTGGATC CAATGATTAT GATGAAGAAT CTGATGCCAC GCGGCGAGCG TGACTGGACT
ACTGCATCGA ATGCCGGTGA AGAATGTCTG GCCTGTCATA ACGCCAACAA TATGCCTACT
CAGGTCATAC GTAATTCGCA AACCAAGCAA GGTGATGAGG ATTACGTTGA GCAGCTGACT
ATGAGTCATC CTGATCAGAA GGTATGGATC CATGCTATGC ATGCTAACAA CCGTGCTAAC
CAAAGTGGTG AAGGTTGGAA GCGTAATGTT GAGTACTCGG CAGATCTGGC AAACTGTGCC
AAGTGTCATA TCGCAGACAG CTTCGATGCC AAGTACCTGG TGGGTCGTAA GCCGCTAGCG
CTGGATCTTG ACTACATGGA TACCTATGAC GGTCTGGACC CTGCAAATGG TAAAGACACC
AGCGGTAACA AGCGTTATGC CGTCGATGCG GTTGCAGATG CTTTTGTATC GCCTACCGCC
GCCGTATGTT TGAGCTGTCA TGGCAAGCGC GCTGCGACAG AGGGTGAAGA TCGCCGTCAA
GTCCGGAAAG ATGTGGTCAG TCATATGAAG CAAAATGGGG CTCAGTTCGG TGTCGAACTT
GGCCAGTACA CAGGCGAAGA GTCTTGTGCA GTCTGTCACG ACCTGACCAA TTTGAAAGAG
GTTCATGGTC TGAAGTAA
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| Protein sequence | MKRFDMKVAT LATLIGLALS GCSGDDGKDG VDGNDGTPGT PAIIVATSAQ SLNVTVEKVA
IASDSAVTFM VTNEKDLPVV GLSHFGFMLS GLEEGENGDA NNWKLLSSES CPDSKYAKCG
TLTDNGDGTY NYHFLKDVTA EPAFTINDDK TLRLMVNTGG EKVGASELPY ANMNYDFRAQ
GETPLYTKNV VNNQNCESCH DDFTIHGGHY TEVETCVSCH TDNKVSSSEK VFPMLAHKAH
IGVISAPVGG CDNCHSENEQ ATDYANWKSV PTQETCITCH TDVNFKEGVG HWPYQDNAQC
ANCHTPDTLE MVHLSTYKGQ NERRNNLHLT VTEAKMVDAP EAKANIDANL DTDKTGYVQL
TVDILDKDGI TRNEQLDLVK YMYYAEFYIN WGGQDMGMER GKVLRVHTNK ENFPGYVDEP
IVLNYENGKT TFEIGPFDLE DDFDGDLNDS YGMVTPRIWF CIDKDGETIQ DCDGKTDWSN
GAAGYNWQHF FNKEGMLEER PRRQIVTNEL CGDCHGTTTS EDGFVQMTLN CRSCHSVVKN
DSTYFGTTCA SGSVDSDGDG ALDPMIMMKN LMPRGERDWT TASNAGEECL ACHNANNMPT
QVIRNSQTKQ GDEDYVEQLT MSHPDQKVWI HAMHANNRAN QSGEGWKRNV EYSADLANCA
KCHIADSFDA KYLVGRKPLA LDLDYMDTYD GLDPANGKDT SGNKRYAVDA VADAFVSPTA
AVCLSCHGKR AATEGEDRRQ VRKDVVSHMK QNGAQFGVEL GQYTGEESCA VCHDLTNLKE
VHGLK
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