Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3463 |
Symbol | |
ID | 5613529 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 4214278 |
End bp | 4215225 |
Gene Length | 948 bp |
Protein Length | 315 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640934403 |
Product | ribose-phosphate pyrophosphokinase |
Protein accession | YP_001475195 |
Protein GI | 157376595 |
COG category | [E] Amino acid transport and metabolism [F] Nucleotide transport and metabolism |
COG ID | [COG0462] Phosphoribosylpyrophosphate synthetase |
TIGRFAM ID | [TIGR01251] ribose-phosphate pyrophosphokinase |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.281933 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.770216 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCCTGACA TTAAACTTTT TGCTGGTAAC GCTACACCTA GTCTCGCTAA GAAGATAGCC GATCGTCTAT TTTGTAAACT TGGAGACGCA GCCGTTGGCG TTTTCAGTGA CGGCGAAATC AGTGTCCAGA TAAACGAGAA TGTACGTGGT GCGGATGTCT TTATCATTCA ATCTACTTGT GCACCAACTA ACGACAACCT AATGGAACTT ATCGTTATGG TTGATGCGTT ACGTCGTGCC TCTGCAGGAC GTATCACTGC AGTTATCCCT TACTTTGGCT ATGCTCGCCA AGATCGTCGT GTTCGCAGTG CTCGTGTACC TATTACCGCT AAAGTCGTTG CCGACTTTTT GTCTAGCGTA GGTGTTGACC GTGTATTGAC TTGTGACCTA CACGCCGAGC AGATCCAGGG GTTCTTCGAT GTACCTGTAG ATAACGTATT TGGTAGCCCT GTGTTACTGG AAGATATGTT AGCTAAGAAT CTTGAAAACC CGGTTGTGGT TTCTCCTGAT ATCGGCGGCG TTGTTCGTGC ACGTGCCGTA GCTAAACTAC TCGACGATTC AGATCTGGCC ATTATCGATA AGCGTCGCCC ACAAGCGAAC GTGGCTCAGG TCATGCACAT CATCGGTGAT GTTCAGGGAC GTGACTGCAT CATCGTTGAC GATATGATCG ATACCGGCGG TACGCTTTGT AAAGCAGCTG AAGCATTGAA AGAACATGGT GCAAACCGCG TATTTGCTTA TGCGACTCAC CCAGTATTCT CAGGCAATGC AGCTAAGAAC ATCGCTGAAT CTGTTATCGA TGAAGTGATT GTCACCGATA CGATTCCATT GAGCCCTGAA ATTGCAGCAC TCGATAAGGT TTCTCAATTG ACTATGTCGT CTGTAATGGC TGAAGCGATT CGTCGCGTTA GCAATGAAGA GTCTATCTCT GCGATGTTCA AGCATTAA
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Protein sequence | MPDIKLFAGN ATPSLAKKIA DRLFCKLGDA AVGVFSDGEI SVQINENVRG ADVFIIQSTC APTNDNLMEL IVMVDALRRA SAGRITAVIP YFGYARQDRR VRSARVPITA KVVADFLSSV GVDRVLTCDL HAEQIQGFFD VPVDNVFGSP VLLEDMLAKN LENPVVVSPD IGGVVRARAV AKLLDDSDLA IIDKRRPQAN VAQVMHIIGD VQGRDCIIVD DMIDTGGTLC KAAEALKEHG ANRVFAYATH PVFSGNAAKN IAESVIDEVI VTDTIPLSPE IAALDKVSQL TMSSVMAEAI RRVSNEESIS AMFKH
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