| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3462 |
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| Symbol | ipk |
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| ID | 5613623 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4213345 |
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| End bp | 4214199 |
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| Gene Length | 855 bp |
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| Protein Length | 284 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934402 |
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| Product | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase |
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| Protein accession | YP_001475194 |
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| Protein GI | 157376594 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1947] 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase |
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| TIGRFAM ID | [TIGR00154] 4-diphosphocytidyl-2C-methyl-D-erythritol kinase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.241146 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.773606 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGCAATA AATTATCACA AGGCTGGCCC GCTCCGGCCA AACTCAATCT TTTTTTACAC
ATCAATGGTC GCAGGGCGGA TGGCTATCAT GAGCTGCAAA CCCTTTTTCA ATTTATCGAC
TACTGTGATT ACCTCGACTT CAAGGTCACC GACACATCGA GCCTCAAATT GCACTCTAAT
ATGGGCGCTG CTGTCGCCGA TAGCGATAAC TTAATTCTGC GTGCCGCAAA ATTACTGCAA
CAGGTATCCG GCTGTGCCAA AGGCGCTGAG ATCTGGCTTG ATAAACGACT CCCCATGGGG
GGAGGTATTG GTGGTGGTTC ATCCGATGCC GCGACAACAT TAGTCGCACT GAATCACCTT
TGGAATACCC AATTAAGTAA AGATAAACTG ATGGCGATAG GATTACAACT CGGTGCCGAT
GTCCCTGTTT TTATTAATGG TTTAGCTGCC TTTGCCGAAG GTGTCGGTGA AGAGCTACAA
GCGGTTTTCC CCACAGAGTA TTGGTACTTA GTGCTGATCC CAAATGTACA TGTTTCTACC
GCAGAAATAT TCCAGGATCC TGAGTTACCT CGTGATACAC CTAAGCTTGA TATCGCCTCA
TTAATGAATG GTAGCTGGCA AAATGACTGC CAGTCATTGG TAGCAAAGCG CCACCCTCAA
GTTGCCAAAA CACTGCTCTG GCTGCTAGAA TATGCGCCGT CCAGAATGAC CGGAACAGGA
GCATGTGTTT TCGGGGAGTT CGAACAGCAG CAGCAGGCCT TAGATGTTTT GGCGAAATTG
CCGAGCGATA TGACAGGGCT TGTGGCGAAA GGGGCAAATA CATCATCTTT AGAGCTGAGA
TTAGCTCAGC TTTAA
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| Protein sequence | MSNKLSQGWP APAKLNLFLH INGRRADGYH ELQTLFQFID YCDYLDFKVT DTSSLKLHSN
MGAAVADSDN LILRAAKLLQ QVSGCAKGAE IWLDKRLPMG GGIGGGSSDA ATTLVALNHL
WNTQLSKDKL MAIGLQLGAD VPVFINGLAA FAEGVGEELQ AVFPTEYWYL VLIPNVHVST
AEIFQDPELP RDTPKLDIAS LMNGSWQNDC QSLVAKRHPQ VAKTLLWLLE YAPSRMTGTG
ACVFGEFEQQ QQALDVLAKL PSDMTGLVAK GANTSSLELR LAQL
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