| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3459 |
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| Symbol | prfA |
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| ID | 5613726 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4210078 |
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| End bp | 4211163 |
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| Gene Length | 1086 bp |
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| Protein Length | 361 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640934399 |
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| Product | peptide chain release factor 1 |
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| Protein accession | YP_001475191 |
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| Protein GI | 157376591 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0216] Protein chain release factor A |
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| TIGRFAM ID | [TIGR00019] peptide chain release factor 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.439809 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGGACA GTGTCATTCG CAAGCTAGAA GGCTTGCTTG AGCGTAACGA AGAAGTGTTA
GCTCTACTCA GTGATCCGGG TGTTATTTCC GATCAGGAGC GTTTTCGTGC ACTCTCAAAA
GAGTATTCTC AACTCGAAGA TGTCGTCACA AGCTTTAAAT CTTTCCAGCA AGCTACAGAA
GATCTTGAAG CGGCGAAAGA GATGGCTAGT GATGATGATC CTGAGCTCAA AGAGATGGCT
CAGGAAGAGA TGAAAGAAGC TAAGTCACTG TTAGAAAAGC TTGAAGATGA GCTGCAGATC
CTGCTGCTTC CAAAAGATCC TAATGATGAT AACAACTGCT TTATTGAAAT TCGTGCAGGT
GCGGGTGGCG ATGAAGCGGC TATTTTTGCC GGCGATCTGT TCCGCATGTA CAGCAAATAC
GTTGAAAGTA AGCGCTGGCA GTTAGAAGTG ATGAACACCA ACGAAGGTGA ACATGGTGGC
TTTAAAGAGG TCATTGCTAA AGTCAGCGGT GAAGGCGTAT ACGGACAATT GAAGTTTGAG
TCTGGCGGAC ATCGAGTTCA ACGTGTGCCA GAAACAGAGT CTCAAGGCCG CGTACACACC
TCTGCATGTA CCGTTGTTGT TTTGCCTGAA ATTCCTGAAT CAGAAGCCAT TGAAATTAAT
AAGGGCGATT TGAAAGTCGA TACTTTCAGA GCATCGGGCG CCGGTGGACA GCACGTCAAC
AAAACAGATT CGGCTATCCG CCTTACTCAC ATCCCGTCAG GTATTGTCGT TGAGTGTCAA
GACCAGCGCT CACAGCATAA GAACCGTGCT CAAGCGATGA GTGTGCTTAC AGCCCGTATT
CAAGCTGTAG AAGATGAAAA GCGTCGTAGC GCCGAAGAGA GCACTCGCCG AAATCTTGTA
GGTAGTGGTG ATCGTTCAGA GCGAATTCGT ACCTATAACT TCCCACAAGG TCGTGTGAGT
GAGCATCGAA TTAACCTGAC ACTTTATCGT TTAAATGAAG TGATGGAAGG TGAACTCGAC
GCAATCCTCG AGCCCTTAAT GCTAGAAAAC CAAGCAGATA TGCTAGCCGC ATTATCAGAA
GAGTAA
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| Protein sequence | MKDSVIRKLE GLLERNEEVL ALLSDPGVIS DQERFRALSK EYSQLEDVVT SFKSFQQATE
DLEAAKEMAS DDDPELKEMA QEEMKEAKSL LEKLEDELQI LLLPKDPNDD NNCFIEIRAG
AGGDEAAIFA GDLFRMYSKY VESKRWQLEV MNTNEGEHGG FKEVIAKVSG EGVYGQLKFE
SGGHRVQRVP ETESQGRVHT SACTVVVLPE IPESEAIEIN KGDLKVDTFR ASGAGGQHVN
KTDSAIRLTH IPSGIVVECQ DQRSQHKNRA QAMSVLTARI QAVEDEKRRS AEESTRRNLV
GSGDRSERIR TYNFPQGRVS EHRINLTLYR LNEVMEGELD AILEPLMLEN QADMLAALSE
E
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