| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3458 |
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| Symbol | |
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| ID | 5613725 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4209180 |
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| End bp | 4210022 |
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| Gene Length | 843 bp |
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| Protein Length | 280 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640934398 |
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| Product | HemK family modification methylase |
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| Protein accession | YP_001475190 |
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| Protein GI | 157376590 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2890] Methylase of polypeptide chain release factors |
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| TIGRFAM ID | [TIGR00536] HemK family putative methylases
[TIGR03534] protein-(glutamine-N5) methyltransferase, release factor-specific |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.430635 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | TTGTACCAGA CTCTAGTCGA GGCCCTCGAG TGGGCTTCAT CTCAACTGCA TAAAATCTCA
GATACGCCAA AACTTGATGC CGAGGTGATA TTACTGCATA TCATTCATCA GCAACGCGGG
TATCTCTATA CCTGGCCTGA TGAGCGATTA ACATCGGATC AGGTGACGGC TTTTGGCGAG
ATGGTTGCCA GACGCCTCCT GGGTACACCT ATTGCGCATA TCGTCGGAGA ACGTGAATTT
TGGTCTCTGC CATTTATGGT CAACCCGACG ACGTTAATCC CGAGACCGGA TACCGAAATT
TTAGTCGAAA CGGCATTGAA TCTACCACTG GCTGACAGTG CCCGGGTATT AGATTTAGGC
ACCGGAACCG GGGCTATTGC GCTCTCACTG GCCTATGAGA AGCCAGAGTG GCAGATCACT
GCGGTCGATA AGATCATCGA AGCGGTGGCT CTGGCTAAGG CTAATCGAGC ACACCTGAAG
CTTCCACAGG TCGAGATTGT ACAGAGTGAC TGGTTCGACT CAGTTGCCTG TTATGATTTC
AACTTAATCG TCTCTAATCC GCCCTACATA GATGAAACAG ATGAACACCT GAGCCAGGGC
GATGTCAGGT TCGAGCCTCA AAGCGCGTTG ACGGCTGGAG AAGAGGGCTT TGCGGATCTC
TATCATATCG CCTCATGTGC GAGAGATTAT CTCGCTCCCG GCGGTTACCT GTTGCTCGAG
CATGGTTATC AGCAAGCCAT ACAGCTCAGA AAGAAGATGA TCGAGCTGGG ATATGAAAAT
GTCGCCACAG TGCGGGACTT TGGCAGTAAC GACCGCTGTA CGTTGGGGCG TTGGCCAAGA
TAG
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| Protein sequence | MYQTLVEALE WASSQLHKIS DTPKLDAEVI LLHIIHQQRG YLYTWPDERL TSDQVTAFGE
MVARRLLGTP IAHIVGEREF WSLPFMVNPT TLIPRPDTEI LVETALNLPL ADSARVLDLG
TGTGAIALSL AYEKPEWQIT AVDKIIEAVA LAKANRAHLK LPQVEIVQSD WFDSVACYDF
NLIVSNPPYI DETDEHLSQG DVRFEPQSAL TAGEEGFADL YHIASCARDY LAPGGYLLLE
HGYQQAIQLR KKMIELGYEN VATVRDFGSN DRCTLGRWPR
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