| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3453 |
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| Symbol | |
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| ID | 5613556 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4204091 |
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| End bp | 4204486 |
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| Gene Length | 396 bp |
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| Protein Length | 131 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640934393 |
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| Product | invasion gene expression up-regulator, SirB |
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| Protein accession | YP_001475185 |
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| Protein GI | 157376585 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3094] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAACTT TTTACAGCCT TTACCCGGTG ATTAAGCATC TTCATTTGAC TCTGGTTGCG
GCTAGCGTCT TGTTTTTCCT GGTACGTTTC GTATTGCACC TGCGTCAATC TCCAATCATG
GATAAGAAGC TGGTTAAAAT TGCTCCCCAT GTGATAGATA CTTTCCTGTT GTTATCGGGT
TTGACACTCT GCTTTATGAT TAAGCAGTAT CCTTTTGTCG ATCCTTGGTT AAGTGAAAAG
CTAGGGGCTG TAGTTGCCTA TATCTTCCTT GCGACTATTT CGATGAAGGC ACAAAGAGGC
ACTTTGTTCA AAGTCTTTGC TGCTCTAGGT GCGGTTGGCT GGATATTTTA CGCTGCAAAA
TTGGCCATGT TTAAACAAGC GATGCTGTTG GGATAA
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| Protein sequence | METFYSLYPV IKHLHLTLVA ASVLFFLVRF VLHLRQSPIM DKKLVKIAPH VIDTFLLLSG
LTLCFMIKQY PFVDPWLSEK LGAVVAYIFL ATISMKAQRG TLFKVFAALG AVGWIFYAAK
LAMFKQAMLL G
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