| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3450 |
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| Symbol | |
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| ID | 5610733 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4200701 |
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| End bp | 4201549 |
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| Gene Length | 849 bp |
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| Protein Length | 282 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640934390 |
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| Product | 2-dehydro-3-deoxyphosphooctonate aldolase |
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| Protein accession | YP_001475182 |
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| Protein GI | 157376582 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2877] 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase |
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| TIGRFAM ID | [TIGR01362] 3-deoxy-8-phosphooctulonate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTAATA AAATCATAGG TCTGGGTTCA ATCGAGATTG CAAACGATAA ACCTTTTGTG
TTGTTTGGCG GTATGAATGT ACTCGAGTCG CGCGATTTAG CAATGAAGAT TGCTGAAACT
TACGCCGAAG TGACTCAAAA GCTTGGTATT CCTTATGTTT TTAAAGCGTC TTTCGATAAG
GCTAACCGCT CTTCAGTAAA TTCATACCGT GGTCCGGGAA TGGAAGAGGG GTTGAAGATT
TTCGAAGAGA TAAAATCGAC CTTTAATCTC CCTCTTATCA CCGATGTTCA TGAAGTACAC
CAGTGTGCCC CAGTGGCAGA AGTGGTCGAT ATTATCCAAT TGCCGGCTTT CCTTGCTCGT
CAAACGGATC TGGTTGTGGC AATGGCTAAG ACCGACGCCA TCATCAATGT TAAGAAGCCT
CAGTTCTTAG CGCCTCATGA GATGCGTCAT ATCATTACTA AGTTCAATGA AGCCGGTAAC
GATAAGATCA TCTTGTGTGA ACGCGGCAGT AGCTTCGGTT ATAACAACCT AGTGGTTGAT
ATGTTAGGCA TGGACGAGAT GAAGCAGTCC GGTTACCCGG TGATCTTCGA TGCGACTCAC
GCACTACAGC GCCCGGGCGG ACGAAGCGAC AGCGCTGGTG GTCGTCGTGC TCAGGCTACA
GAACTTGCCC GTAGCGGTAT GGCACTTGGC TTGGCTGGTC TGTTTATCGA AGCGCATCCT
GATCCTGATA ATGCTAAGTG TGATGGCCCG TGCGCACTGC CACTTCATCA GTTAGAGGCG
TATCTGACTC AGATGAAGGC GGTCGATGAC TTGGTTAAAT CATTCGATGC GATTGATACC
AGTAAGTAG
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| Protein sequence | MSNKIIGLGS IEIANDKPFV LFGGMNVLES RDLAMKIAET YAEVTQKLGI PYVFKASFDK
ANRSSVNSYR GPGMEEGLKI FEEIKSTFNL PLITDVHEVH QCAPVAEVVD IIQLPAFLAR
QTDLVVAMAK TDAIINVKKP QFLAPHEMRH IITKFNEAGN DKIILCERGS SFGYNNLVVD
MLGMDEMKQS GYPVIFDATH ALQRPGGRSD SAGGRRAQAT ELARSGMALG LAGLFIEAHP
DPDNAKCDGP CALPLHQLEA YLTQMKAVDD LVKSFDAIDT SK
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