Gene Ssed_3443 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3443 
Symbol 
ID5609908 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp4193198 
End bp4193683 
Gene Length486 bp 
Protein Length161 aa 
Translation table11 
GC content45% 
IMG OID640934383 
Productputative nucleotide-binding protein 
Protein accessionYP_001475175 
Protein GI157376575 
COG category[S] Function unknown 
COG ID[COG1666] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000233798 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTTCAA TGGATATTGT TTCTGAAGTC GATGAAGTTG AGCTGCGAAA TGCCGTAGAA 
AACTCAGTAC GTGAACTGAA GAGTCGTTTC GATTTTCGTG GTAAGGAAGC GAGCATCGAG
TATAAAGACC ATGTGGTCAC GCTATCGGCT GAAGATGATT TTCAGTGTCA GCAATTAGTC
GACATACTAC GCATGCAGAT GAGTAAGCGT AGTGTCGATC CGGCTTCCAT GGATGTCGAT
GAAAAGGCGC TGCATAGTGG CAAGACTTTC TCTTTAAAGG TGCGCTTTAA AGAGGGCATT
GAAACCCTGA TCGCTAAAAA GTTAGTCAAG ATGATTAAAG ACAGTAAGCT GAAGGTTCAA
TCATCTATTC AGGGTGATTC GGTGCGTGTT ACCGGTAAGA AGCGCGACGA TCTGCAAGCC
GTCATGGCAT TGGCTCGTGA GTCTGAATTA GGTCAGCCAT TCCAGTTCAA TAACTTCCGT
GATTGA
 
Protein sequence
MPSMDIVSEV DEVELRNAVE NSVRELKSRF DFRGKEASIE YKDHVVTLSA EDDFQCQQLV 
DILRMQMSKR SVDPASMDVD EKALHSGKTF SLKVRFKEGI ETLIAKKLVK MIKDSKLKVQ
SSIQGDSVRV TGKKRDDLQA VMALARESEL GQPFQFNNFR D