| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3440 |
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| Symbol | |
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| ID | 5609905 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4190528 |
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| End bp | 4191112 |
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| Gene Length | 585 bp |
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| Protein Length | 194 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934380 |
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| Product | peptidyl-prolyl cis-trans isomerase, cyclophilin type |
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| Protein accession | YP_001475172 |
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| Protein GI | 157376572 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0652] Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATCCGTT GGATTAATGC TCTACTCATA CTCTGTTTAA GCCAGGCAGC GGTTGCCGTC
GACATTCAGC CCGATACCCT TTACCCGCAA GTACAACTCG ACACCAGCAT GGGAAAGATA
GTTGTCGAAT TAGACAGAAC GCGAGCCCCC ATCACAGTTG ATAACTTTCT GACCTATGTT
GTGAAGGGAC ACTATGATAA TACCTTGTTT CACCGGGTTA TCGCCGACTT CGTTGTTCAG
GGAGGTGGAT TAAATCTCAA ACAGGAGGAG AAGCCATACG ATGCACCTAT AGTTAACGAA
TCGGGAAATG GTCTATCAAA TTCATTCGGC ACTATCGCCA TGGCCCGTGA TAACGAGCCT
CATTCGGCCA CCAGCCAATT CTACTTCAAT GTAGGTGATA ATGAACGACT TGATCCCTCC
TCCAGACGCT GGGGCTATGC GGTTTTTGGC GAAGTAGCCG AGGGGGAAGA GGTACTTGCG
GCCATGGCTG GCGTTGCAAC AGAACATAAC TCAAAACTGG ACTGGCCCGA CTTTCCTATA
GATGAGATCA TCTTAAAGAA AGCGACGCTA CTTCCCCGAA AGTAA
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| Protein sequence | MIRWINALLI LCLSQAAVAV DIQPDTLYPQ VQLDTSMGKI VVELDRTRAP ITVDNFLTYV
VKGHYDNTLF HRVIADFVVQ GGGLNLKQEE KPYDAPIVNE SGNGLSNSFG TIAMARDNEP
HSATSQFYFN VGDNERLDPS SRRWGYAVFG EVAEGEEVLA AMAGVATEHN SKLDWPDFPI
DEIILKKATL LPRK
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