| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3417 |
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| Symbol | |
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| ID | 5610689 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4166222 |
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| End bp | 4167511 |
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| Gene Length | 1290 bp |
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| Protein Length | 429 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640934357 |
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| Product | xanthine/uracil/vitamin C permease |
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| Protein accession | YP_001475149 |
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| Protein GI | 157376549 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2252] Permeases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.933273 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTAGAAA AATTATTTAA ATTAAAAGAA AACCAAACAT CGTTAAAGCA AGAGGTAGTG
GCGGGATTAA CTACCTTCTT AACCATGGCT TACATTATCT TTGTTAACCC CATGATGCTG
GCCGATGCCG GAATGGATCA TGGTGCTGTT TTTGTTGCGA CCTGTTTGGC TGCCGCTATC
GGGTGTTTGA TTATGGGGAT AGTGGCTAAC TATCCCATTG CACTCGCACC AGGTATGGGC
TTGAATGCAT TTTTTACCTA TACGGTCGTC GGGGAGATGG GCTACAGCTG GGAAACGGCG
CTCGGAGCGG TTTTCCTGTC GGGTATCTGC TTTCTGTTCC TGTCTCTGGT TAAGATCAGA
GAGTGGATAG TAAATAGTAT TCCTATGTCG CTTCGTTTGG GTATTGCGGC CGGTATAGGC
CTGTTCCTTG CTTTAATCGG ACTGAAGAGT GCCGGGATTG TCGTTGCCAG TCCGGCAACA
CTGGTGACCA TGGGAGATGT CACCGCCTTT CCAGCTGTGA TGGCCGTTTT GGGCTTCTTT
ATGATCATTG CGATGGTGCA CCGTGGCATG AAATCTGCCG TTATTGTAAG TATTCTTTCA
ATAACAGTAT TGGGAGTCCT GTTTGGCGAT GTTCAATATC AGGGGGTGAT GTCGACCCCC
CCCTCTATCA TGCCCACCTT TATGAAGATG GATCTCTCCA GTGTGCTGGA GGTGAGTATG
CTCTCGGTTG TATTTGCCTT CCTGTTTGTC GATCTGTTCG ATACCTCCGG GACACTGGTT
GCCGTGGCGC AGCGGGGAGG TTTTCTGGAT GATAAGGGAC GGCTTCCCAG ATTGAACCGT
GCATTGACGG CTGACAGCAC GGCGACGATT GCCGGCGCTA TGCTTGGCAC ATCAACAACG
ACCAGTTATA TCGAAAGTAC TGCGGGTGTG AGTGCGGGAG GCCGTACAGG TCTAACTGCC
GTAGTGGTGG GCATTCTGTT TTTGTGCTCC CTGTTTTTTT CGCCACTTGC GGGAATGGTT
CCTGCCTACG CTACCGCGGG AACCTTGTTT TACGTGGCTA TCTTGATGAT GTCAGGGCTG
GTACACGTTG AGTGGGAAGA TTTGACTGAG GCGGCACCCG TCGTTGTGGT CTGCATTCTG
ATGCCACTTA CATTCTCGAT TGCCACTGGT ATTGCGATGG GCTTTATCTC CTATGCGGTA
ATTAAACTCT TGAGTGGACG ATACAGAGAC CTGAGTGTCG GTGTAGTCGT GTTAGCGGCG
CTGTTTATTG CTAAGTTTAT CTATGGCTAA
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| Protein sequence | MLEKLFKLKE NQTSLKQEVV AGLTTFLTMA YIIFVNPMML ADAGMDHGAV FVATCLAAAI
GCLIMGIVAN YPIALAPGMG LNAFFTYTVV GEMGYSWETA LGAVFLSGIC FLFLSLVKIR
EWIVNSIPMS LRLGIAAGIG LFLALIGLKS AGIVVASPAT LVTMGDVTAF PAVMAVLGFF
MIIAMVHRGM KSAVIVSILS ITVLGVLFGD VQYQGVMSTP PSIMPTFMKM DLSSVLEVSM
LSVVFAFLFV DLFDTSGTLV AVAQRGGFLD DKGRLPRLNR ALTADSTATI AGAMLGTSTT
TSYIESTAGV SAGGRTGLTA VVVGILFLCS LFFSPLAGMV PAYATAGTLF YVAILMMSGL
VHVEWEDLTE AAPVVVVCIL MPLTFSIATG IAMGFISYAV IKLLSGRYRD LSVGVVVLAA
LFIAKFIYG
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