Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3412 |
Symbol | |
ID | 5610756 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 4159768 |
End bp | 4161840 |
Gene Length | 2073 bp |
Protein Length | 690 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640934352 |
Product | peptidase S9 prolyl oligopeptidase |
Protein accession | YP_001475144 |
Protein GI | 157376544 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1506] Dipeptidyl aminopeptidases/acylaminoacyl-peptidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.0581677 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAAGAGAG TCGGAATTCT ACTGTTGTGC ATCTTGCTGC CTGTTGCATC GGCGTTTGCT GAGCAAGCTA AGTCTGAGCA GGCTAAGTCT GAGCAGGCTA AACCTGAACA AGCTACAACA CTATCTGTCG ATCTGTTGTG GCAACTGAAG CGTATCGGTA GTCCAATTGT TTCGTCATCG GGTGAGTATA TTATTGCGCC TGTAACCCAA TATGATGTTC CTGAAGACAA AGGTGCGACG CAACTGTGGC TGTTTGCTAA AGATGGTTCT AACCAGCGGC CAATAACTGC TGAAGGTCTG CTGGTCAGTG AGCCGGTTTT CTCGCCTGAT AGTAAGACAT TAGCTTTTGT GAGCAAGCGT GATAAAGACG AAGCCGGGCA AGTGTATCTG TTGCCGATGG ATAGCCCAGG TGAAGCGCAG CGACTCACCA ATGTACCGGG TGGTGTTAAA GGCGTGAAAT GGGTCGGTGA ACATGTTTAC TTTATTAGCC GTGTTTTCCC CGGTAAAAAC TGGGACGAAA TGGCGGAGCA GTTAAGAGCC AATGAAGACG ATAAAGTTTC TGCACGTCAA TGGAACGCGC TGCCCTATTC CAGTTTTGAT CACTGGATTG AGGAGGACCG CCAAGCGCAC GTTTTCCGTA TTCCTGCAAA GGGTGGTGAG GTTGAAGCCA TCACACAACC GATGAATAAA CAGTTACCCC GTTCATCTCA AAGTGCTGCG AACTACGATA TCTCAGCCGA TGAACGTCTG ATTGCGTTTA ATAGCAATGG TTGGGAAAAC CAGGTCGATC CTAAAGTTGA TATCTTTATG GCAAAGATTG GCAGCGATAA AGTGGAAAAC TTAACCCAAA AGAATGAAGC TCCAGACACT AACCCGACCT TTAGTCCTGA TGGTAAAACG TTAGCGTTTA CCCGTCAGCT TATTCATGGT TTTTATGCCG ATACTGCTAA CTTGGTGTTA TTCGATGTAA AGAAACGCAC TGAACGTGAA ATTACAACTG ACTGGGATCG CTCTGTTACT CGCTTTAGTT GGACCGCCGA TAGTAAAGGC TTCTACGCCG CTATAGATGA CGCTGCAACC CGCCGCATTT ATCATATCGA TGCCAAAAGT AGCAAAATCA AACCTATCAC CAAACAAACC AACTTCGGCA AGCCTTCTAT TGCACAAGAC GGCACGTTAG TGGCGGCAAA CGATAGCTTT TTATACCCAG CTCGCGTAGT AAAAATTAAT CCCAATAACG GTAAAACTAT ACGTTTAGAT AGTTTCAATG ACGATATTCT TGCCGATGTA GATATGGGAA CCTATGAGTC GGTAACCTAT AAAGGTTATA ACGATGAAGA TGTACAGATG TGGGTGCATT ACCCGCCAGG GTTCGATAGC AGCAAAAAGT ACCCGTTGAT GATGCTGATC CACGGTGGTC CACATGGCGC TATTTCTGAT GGCTTCCATT ACCGCTGGAA TGCACAGACA TTTGCCTCTT GGGGATATGT AACTGCGTGG CCTAATTTCC ACGGCTCAAA TAGTTTCGGT CAAGATTATA CCGACAGCAT TAACCCCGAT TGGAAAAATA AGTCATTGGA AGATGTCTTT AAAGCCACCG AGTGGTTTAC GCAAAAAGAG TGGATCGATA ACGATCGCTT AGTGGCTGGT GGCGCAAGTT ATGGCGGGTA CCTAACCTCA ATTATCTTAG GTCAGGAGCA TCCGTTTAAC GCCCTGTTTA TCCATGCCGC GGTTTATAAC ATGTACTCGC AGATGGCAGC GGACTTCTCA GTACACAGCA CTCGATTTGG CAGCTATTGG GAAAAGCCTG AAATTTATAA AGCTATCTCA CCCCATTACG GTGCTAAAAA TTTCAATACT CCAACCTTAG TGGTTCATGG GCAGCTGGAT TACCGTGTTC CTGTTGGTCA AGGCTTCGAG TTATTCCGCA CCTTGCAAAC TCGCGGTGTA GAATCTCGCA TGATCTACTT CCCCGATGAA AACCATTGGA TCATGAAGCC AAATAATTCA ATTTATTGGT ATAACCAAGT GGAAGACTGG ATGAACAAGT ATGCTGAGCC TGGTGGGAAG TAG
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Protein sequence | MKRVGILLLC ILLPVASAFA EQAKSEQAKS EQAKPEQATT LSVDLLWQLK RIGSPIVSSS GEYIIAPVTQ YDVPEDKGAT QLWLFAKDGS NQRPITAEGL LVSEPVFSPD SKTLAFVSKR DKDEAGQVYL LPMDSPGEAQ RLTNVPGGVK GVKWVGEHVY FISRVFPGKN WDEMAEQLRA NEDDKVSARQ WNALPYSSFD HWIEEDRQAH VFRIPAKGGE VEAITQPMNK QLPRSSQSAA NYDISADERL IAFNSNGWEN QVDPKVDIFM AKIGSDKVEN LTQKNEAPDT NPTFSPDGKT LAFTRQLIHG FYADTANLVL FDVKKRTERE ITTDWDRSVT RFSWTADSKG FYAAIDDAAT RRIYHIDAKS SKIKPITKQT NFGKPSIAQD GTLVAANDSF LYPARVVKIN PNNGKTIRLD SFNDDILADV DMGTYESVTY KGYNDEDVQM WVHYPPGFDS SKKYPLMMLI HGGPHGAISD GFHYRWNAQT FASWGYVTAW PNFHGSNSFG QDYTDSINPD WKNKSLEDVF KATEWFTQKE WIDNDRLVAG GASYGGYLTS IILGQEHPFN ALFIHAAVYN MYSQMAADFS VHSTRFGSYW EKPEIYKAIS PHYGAKNFNT PTLVVHGQLD YRVPVGQGFE LFRTLQTRGV ESRMIYFPDE NHWIMKPNNS IYWYNQVEDW MNKYAEPGGK
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