Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3409 |
Symbol | dnaK |
ID | 5609762 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 4155301 |
End bp | 4157223 |
Gene Length | 1923 bp |
Protein Length | 640 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640934349 |
Product | molecular chaperone DnaK |
Protein accession | YP_001475141 |
Protein GI | 157376541 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0443] Molecular chaperone |
TIGRFAM ID | [TIGR02350] chaperone protein DnaK |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0543718 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.00118284 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGGTAAAA TTATTGGTAT CGATTTAGGC ACAACCAACT CTTGCGTAGC CGTATTAGAT GGCGACACAC CACGCGTATT GGAGAATGCC GAAGGCGATC GTACTACCCC TTCAATCATT GCCTACACTG GTGAAGAGAT CTTAGTGGGT CAACCTGCAA AGCGTCAGGC TGTTACAAAC CCAACAAATA CTTTCTTCGC AATTAAGCGT CTTATCGGTC GTCGTTTTAA AGATGACGAA GTTCAGCGTG ATGTTGACAT CATGCCGTTC AAGATCATCG GTGCCGACAA TGGCGATGCA TGGGTTGAAG CTCATGGTAA GAAGATGGCT CCGCCACAAG TTTCAGCTGA AACTTTGAAG AAGATGAAGA AAACTGCCGA AGATTTCTTA GGCGAAGAAG TGACAGAAGC GGTAATTACC GTTCCTGCAT ACTTCAACGA TTCACAGCGT CAAGCGACTA AAGATGCTGG CCGTATCGCT GGTCTTGAAG TTAAGCGTAT CATCAACGAG CCAACAGCGG CTGCACTTGC TTACGGTATC GATAAGAAGC AAGGTGACAA CATCGTTGCT GTATACGACT TAGGTGGTGG TACTTTCGAT ATCTCAATCA TCGAAATCGA CAGTGTTGAC GGCGAGCAGA CTTTCGAAGT GCTTGCGACT AACGGTGACA CTCACTTAGG CGGTGAAGAT TTTGATAACC GTCTAATTAA CTACCTGGCA GACGAGTTCA AGAAAGAGCA ATCTCTTGAC CTACGCAACG ATCCGCTAGC GATGCAGCGT CTGAAAGAAG CTGCAGAGAA AGCAAAAATT GAGCTTTCAA GCGCATCACA AACTGAAGTT AACCTGCCTT ACATCACCGC CGATGCAACA GGTCCTAAAC ACTTAGTGGT TAAGATCACT CGAGCAAAAC TTGAGTCATT AGTTGAAGAC CTTATTACAC GTACGCTTGA GCCGCTAAAA GTTGCTCTTG CAGATGCAGA CCTATCAGTT TCTGATATCA ACGAAGTGAT TCTTGTTGGT GGTCAGACAC GTATGCCTAA AGTACGTACC GAGGTTTCTG AGTTCTTCGG TAAAGAACTA CGTCAAGATG TTAACCCTGA TGAAGCGGTT GCCATTGGTG CAGCAGTTCA AGCCGGTGTA CTTTCTGGTG ATGTAAAAGA CGTACTTCTA CTAGACGTTA CACCTCTGTC TCTTGGTATT GAGACTATGG GTAGCGTAAT GACTAAGCTT ATCGAGAAGA ACACCACTAT CCCGACGAAA GCTTCACAAA CATTCTCGAC TGCTGACGAT AACCAGAGTG CTGTGACTAT TCACGTACTT CAGGGTGAGC GTAAGCAATC AAGCGGTAAC AAGTCTCTGG GTCAATTTAA CCTGGAAGGT ATCGAAGCAG CTCCTCGTGG GATGCCACAG ATTGAAGTGG CTTTCGATAT CGATGCCGAT GGTATCTTGC ATGTTTCTGC AACCGATAAG AAAACAGGTA AAGCACAGAA TATCACCATT AAAGCCTCTT CTGGTCTGAG TGAAGAAGAA GTAGAAGCTA TGGTTCGTGA TGCTGAAGCA CACGCTGACG AAGACGCTAA GTTCGAAGAG CTGGTCACTG CACGTAACCA AGCAGATGGC ATGGTTCATG CGACTAAGAA GCAGATCGAA GAAGCCGGTG AAGCACTACC AAGCGATGAG AAAGAGAAGA TTGAAACTGC AATGGCTGCA GTCGATACCG CAGTTAAGGG TAACGACAAA GAAGCAATTG AGAAGTCAAC TCAAGAGCTA ATGGAAGCGT CTTCGAAGTT GATGGAAATT GCCCAAGCTA AGGCGCAAGC TGAGCAGGGA CAGCAGGCTC CAGAAGGTGA AGCACAAGCG GCTAAGCCTG ATGAAGATGT TGTTGATGCT GAGTTTGAAG AAGTGAAAGA TGACAAGAAA TAA
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Protein sequence | MGKIIGIDLG TTNSCVAVLD GDTPRVLENA EGDRTTPSII AYTGEEILVG QPAKRQAVTN PTNTFFAIKR LIGRRFKDDE VQRDVDIMPF KIIGADNGDA WVEAHGKKMA PPQVSAETLK KMKKTAEDFL GEEVTEAVIT VPAYFNDSQR QATKDAGRIA GLEVKRIINE PTAAALAYGI DKKQGDNIVA VYDLGGGTFD ISIIEIDSVD GEQTFEVLAT NGDTHLGGED FDNRLINYLA DEFKKEQSLD LRNDPLAMQR LKEAAEKAKI ELSSASQTEV NLPYITADAT GPKHLVVKIT RAKLESLVED LITRTLEPLK VALADADLSV SDINEVILVG GQTRMPKVRT EVSEFFGKEL RQDVNPDEAV AIGAAVQAGV LSGDVKDVLL LDVTPLSLGI ETMGSVMTKL IEKNTTIPTK ASQTFSTADD NQSAVTIHVL QGERKQSSGN KSLGQFNLEG IEAAPRGMPQ IEVAFDIDAD GILHVSATDK KTGKAQNITI KASSGLSEEE VEAMVRDAEA HADEDAKFEE LVTARNQADG MVHATKKQIE EAGEALPSDE KEKIETAMAA VDTAVKGNDK EAIEKSTQEL MEASSKLMEI AQAKAQAEQG QQAPEGEAQA AKPDEDVVDA EFEEVKDDKK
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