Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3407 |
Symbol | |
ID | 5609760 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 4152932 |
End bp | 4153732 |
Gene Length | 801 bp |
Protein Length | 266 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640934347 |
Product | peptidase M48, Ste24p |
Protein accession | YP_001475139 |
Protein GI | 157376539 |
COG category | [R] General function prediction only |
COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.029445 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.000231655 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAAACCT TACTTATCCT ATTCACTACT CTCATCCTTT TGAGTGGCTG TGCCACGCAT CAATCGCCTA CGGGGCGAAA CCAGGTGTTG CTCTTCTCCT CTCAAGAGCT AGAACAGATG GGCACTAGCT CATTTGCTCA GATAAAAAAA CAGGAAAAAA TAAGTCAGGA TGCGGCGACA AATCGCTATG TCGATTGTGT CGCTAGTCGG ATCACCGCTG TGCTGCCCAA CTCCGGGTTA CCTTGGGATG TTGTTGTGTT TGAATCCGAG CAGGTCAACG CATTTGCCTT ACCCGGAGGG CACATCGGCG TTTATACCGG TTTGCTACAC GTTGCAGAGA ATGAGCATCA ATTAGCGACG GTTATAGGCC ATGAAGTGGC ACATGTTCTC GCCAAACACA GTAATGAGCA GGTTTCTCGT GCGCAGCTCT CGGGCATAGG CATGCAAATT GCCGATGCCG CACTCGGTGC GGGTGGGATC AGCAACAAAG AGCTGTATAT GGCGGCTTTG GGCTTAGGGG CACAAGTTGG GTTTATTTTA CCCTACGGAA GAAAGCAGGA GAGTGAAGCG GATATCATGG GCGTGGAATT AATGGCACGC GCAGGCTTCG ATCCCAGTCA AAGTATCGCA TTATGGCAAA ATATGGCAAA ACACGGTGGA GAGCAGGGGC CAGAGTTGTT GTCGACGCAT CCATCTCATG GACATCGAAT CGATGATTTA GCTCAGATGC AACAGCAAGT GATGCCTTTA TATCAGGCCA GTAAACCTGC GGCTGAGAAC AGTTGCCAAT TTACGAAATA A
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Protein sequence | MKTLLILFTT LILLSGCATH QSPTGRNQVL LFSSQELEQM GTSSFAQIKK QEKISQDAAT NRYVDCVASR ITAVLPNSGL PWDVVVFESE QVNAFALPGG HIGVYTGLLH VAENEHQLAT VIGHEVAHVL AKHSNEQVSR AQLSGIGMQI ADAALGAGGI SNKELYMAAL GLGAQVGFIL PYGRKQESEA DIMGVELMAR AGFDPSQSIA LWQNMAKHGG EQGPELLSTH PSHGHRIDDL AQMQQQVMPL YQASKPAAEN SCQFTK
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