Gene Ssed_3407 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3407 
Symbol 
ID5609760 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp4152932 
End bp4153732 
Gene Length801 bp 
Protein Length266 aa 
Translation table11 
GC content49% 
IMG OID640934347 
Productpeptidase M48, Ste24p 
Protein accessionYP_001475139 
Protein GI157376539 
COG category[R] General function prediction only 
COG ID[COG4783] Putative Zn-dependent protease, contains TPR repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.029445 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000231655 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAAACCT TACTTATCCT ATTCACTACT CTCATCCTTT TGAGTGGCTG TGCCACGCAT 
CAATCGCCTA CGGGGCGAAA CCAGGTGTTG CTCTTCTCCT CTCAAGAGCT AGAACAGATG
GGCACTAGCT CATTTGCTCA GATAAAAAAA CAGGAAAAAA TAAGTCAGGA TGCGGCGACA
AATCGCTATG TCGATTGTGT CGCTAGTCGG ATCACCGCTG TGCTGCCCAA CTCCGGGTTA
CCTTGGGATG TTGTTGTGTT TGAATCCGAG CAGGTCAACG CATTTGCCTT ACCCGGAGGG
CACATCGGCG TTTATACCGG TTTGCTACAC GTTGCAGAGA ATGAGCATCA ATTAGCGACG
GTTATAGGCC ATGAAGTGGC ACATGTTCTC GCCAAACACA GTAATGAGCA GGTTTCTCGT
GCGCAGCTCT CGGGCATAGG CATGCAAATT GCCGATGCCG CACTCGGTGC GGGTGGGATC
AGCAACAAAG AGCTGTATAT GGCGGCTTTG GGCTTAGGGG CACAAGTTGG GTTTATTTTA
CCCTACGGAA GAAAGCAGGA GAGTGAAGCG GATATCATGG GCGTGGAATT AATGGCACGC
GCAGGCTTCG ATCCCAGTCA AAGTATCGCA TTATGGCAAA ATATGGCAAA ACACGGTGGA
GAGCAGGGGC CAGAGTTGTT GTCGACGCAT CCATCTCATG GACATCGAAT CGATGATTTA
GCTCAGATGC AACAGCAAGT GATGCCTTTA TATCAGGCCA GTAAACCTGC GGCTGAGAAC
AGTTGCCAAT TTACGAAATA A
 
Protein sequence
MKTLLILFTT LILLSGCATH QSPTGRNQVL LFSSQELEQM GTSSFAQIKK QEKISQDAAT 
NRYVDCVASR ITAVLPNSGL PWDVVVFESE QVNAFALPGG HIGVYTGLLH VAENEHQLAT
VIGHEVAHVL AKHSNEQVSR AQLSGIGMQI ADAALGAGGI SNKELYMAAL GLGAQVGFIL
PYGRKQESEA DIMGVELMAR AGFDPSQSIA LWQNMAKHGG EQGPELLSTH PSHGHRIDDL
AQMQQQVMPL YQASKPAAEN SCQFTK