Gene Ssed_3400 details

Gene Information

• Locus tag: Ssed_3400
• Symbol: secD
• ID: 5609698
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella sediminis HAW-EB3
• Kingdom: Bacteria
• Replicon accession: NC_009831
• Strand: -
• Start bp: 4143230
• End bp: 4145044
• Gene Length: 1815 bp
• Protein Length: 604 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 640934340
• Product: preprotein translocase subunit SecD
• Protein accession: YP_001475132
• Protein GI: 157376532
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.0357817
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 6
• Fosmid unclonability p-value: 0.0000399692
• Fosmid Hitchhiker: No
• Fosmid clonability: decreased coverage

Sequence

Gene sequence

ATGAGAAAAC GTAGCAATAA CAAAGTATTA AATCATTATT CAGTGTGGAA GTATGTTGTG 
CTGGTGATAA CTTTCATCAT CATGCTTTTC AGTGCCTTAC CAACCTTGTA TGGAGAAGAT 
GCGGCTATTC AAATTGGTGC CAAAGCTGGC TTAAATCTAA CACCACAGGC CCTCAATAGA 
GTATTGACGG ATGAGGGGAT TCAAGTGAAA AGAATCACCC AGGCTGAAGG TGAAACGGTT 
GTCGTACTCG AGCAAGAAAC TCAGCAGAGC CAGGCCAAAG CGCTCTTAAA TAATGCCGTT 
GAGGATGATT CACAGCTGAC ACTTTCCTTG GCTCCTGCGG CACCCGACTG GCTACTCTCC 
ATGGGTTTTA CACCGATAAA ACTTGGGCTT GACCTTCGTG GTGGAGTGCA GTTTTTGTTG 
GATGTTGAGG TTGAACCTGT ATACCAGCTA CATTATGACG CCTTCGTAGA TTCAGTCAGA 
CAGTTTACCC GCATGCAGGG GCTAAACGGT GTCAGTGTCC GCCTGGACAG CGAGGCGGGA 
GTTGTCATCA CTATGCCGGA TACCAGCCAC AGAGGAGATA TTAGGCAGTT CATTAAAACT 
AATTATCCGA TTTGGCAGGT AACGAACTTA GAAAACCGTT CTCTGAAGGC TGATTTTAAG 
CCGGACGAGA AGGTTAAAAT TCGCGATCTC ACCGTAAAAC AGAACTTGCA GATCATGCGC 
AGCCGAATCG AGCAGCTGGG GATCACCGAA GCCTTAGTTC AGCGCCAGGG GGAACACAGG 
ATCAGAATCG AACTGCCTGG TGTTCAGGAT CCGGCAGCGG CAAAGAGTGT TATTGGCGCG 
ACGGCGAGCC TGGCTTTTTA TGAAGTGAAA GATGCCGGGT CGGTAAACGC TAAAATCTTA 
AAGGATAAAT CAGAACTTCC TGTCTATGTG GCCAGAAAGC CGGTACTCGG TGGGGAGCAT 
ATTGTCGATG CCAGGGCGAG TCTGGGAGAG ATGGGGATGC CTGAGGTGGT GATCCATCTG 
GATCGAGCCG GTGGAAAAGT GATGTCCGAC TTCTCTCGTG ACAATATCGG TAAGCCGATG 
GCGACATCCT ATAGCGAATA CAGCCGTGAT GAGCAAGGCA AGGTGACTCA AAGTACAGAG 
GTTATCAGCG TTGCGACGAT TCAATCTCAA CTTGGTGATC GCTTTAGCAT CACCGGGGCA 
GGCGATTATT CACAGGCGCA GCAGTTAGCG TTATTACTTC GGGCCGGCTC TATGACTGCT 
CCGGTTACCA TAGTAGAGGA ACGCACCATT GGGCCGAGCC TCGGCGCGGA AAATATCACC 
AATGGGTTTT CCGCCTTGGG GCTGGGAATG GCGATGACCT TACTCTTTAT GGGACTCTGG 
TATCGCCGCT TAGGTTGGGT TGCCAATGTG GCTCTGATTG CCAATATGGT GATTTTATTT 
GGCCTGCTGG CATTAATTCC CGGCGCCGTG TTAACCCTAC CGGGTATCGC TGGTTTAGTG 
TTAACCGTGG GAATGGCGGT CGATACCAAT GTACTTATCT TCGAGCGAAT AAAGGATAAA 
TTAAAGGAGG GAAGAGGCTT TGCTCACGCA ATCGACCGAG GTTTTGATAG CGCAATTTCG 
ACGATTTTTG ATGCTAATTT TACCACTATG ATCACCGCCG TGGTGCTCTA CTCCATCGGT 
AACGGACCCA TTCAAGGCTT TGCCTTAACC TTAGGGCTTG GGCTACTCAC CAGCATGTTC 
ACAGGCATTT TCGCTTCTCG AGCATTAATT AATTGGGTAT ATGGACGTGA CTTTAGCCGC 
GATGTGAAGG TGTAA 

 

Protein sequence

MRKRSNNKVL NHYSVWKYVV LVITFIIMLF SALPTLYGED AAIQIGAKAG LNLTPQALNR 
VLTDEGIQVK RITQAEGETV VVLEQETQQS QAKALLNNAV EDDSQLTLSL APAAPDWLLS 
MGFTPIKLGL DLRGGVQFLL DVEVEPVYQL HYDAFVDSVR QFTRMQGLNG VSVRLDSEAG 
VVITMPDTSH RGDIRQFIKT NYPIWQVTNL ENRSLKADFK PDEKVKIRDL TVKQNLQIMR 
SRIEQLGITE ALVQRQGEHR IRIELPGVQD PAAAKSVIGA TASLAFYEVK DAGSVNAKIL 
KDKSELPVYV ARKPVLGGEH IVDARASLGE MGMPEVVIHL DRAGGKVMSD FSRDNIGKPM 
ATSYSEYSRD EQGKVTQSTE VISVATIQSQ LGDRFSITGA GDYSQAQQLA LLLRAGSMTA 
PVTIVEERTI GPSLGAENIT NGFSALGLGM AMTLLFMGLW YRRLGWVANV ALIANMVILF 
GLLALIPGAV LTLPGIAGLV LTVGMAVDTN VLIFERIKDK LKEGRGFAHA IDRGFDSAIS 
TIFDANFTTM ITAVVLYSIG NGPIQGFALT LGLGLLTSMF TGIFASRALI NWVYGRDFSR 
DVKV