| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3399 |
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| Symbol | |
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| ID | 5609697 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4142302 |
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| End bp | 4143228 |
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| Gene Length | 927 bp |
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| Protein Length | 308 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640934339 |
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| Product | protein-export membrane protein SecF |
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| Protein accession | YP_001475131 |
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| Protein GI | 157376531 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0341] Preprotein translocase subunit SecF |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00684412 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.000027343 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAATACAA ATACAAATAC AAATACAATG AACAGACTAA CAAAATGGCG CTACTTTTCG
AGCTGTATCT CTCTGGTATT GATGATTCTT TCCCTGACGG TAATTTCTGT CAAAGGGTTT
AATTGGGGAC TGGATTTTAC CGGCGGTGTG GTTACAGAAG TCCGTATTGA CAGTGATATT
AAAGCGAACC AAATTGAAAG CTTGTTGGGT AAAATGTCCG AACAGGAGGT GAGTGTTATC
TCCGCCGGTG AACCAGGCCG TTGGGTATTG CGGTATAGTC AGGCGGAAAC CTCGGGGGAT
GTAAGTGCTA ACGCCTTAGA TATTGAGCAG GTGCTCGCCT CGTTACACAG TGGTGTTGAG
GTACTTAACT CGAGCATCGT TGGCCCACAA GTTGGTCAGG AGTTAGCAGA GCAGGGCGGA
TTAGCCTTGT TGGTTGCTAT GTTATGTATC TTAGGGTATC TGAGTTTTCG GTTCGAGTGG
CGCCTCGCCA GCGGAGCGCT ATTTGCGCTG TTTCACGACG TTATCTTTGT TCTGGCTTTC
TTCTCACTGA CTCAGATGGA GTTTAACTTA ACTGTCCTCG CCGCAGTGTT GGCTATTTTA
GGCTATTCAC TCAACGACTC TATTATTATC GCCGATAGGA TCAGGGAGTT ATTAACTTCA
AAACCTAAGA TGGCCATCTC CGATGTGTGT ACCAGTGCGG TGAAGGCAAC CTTCTCGCGG
ACGATGGTAA CCAGTGGTAC GACGTTGATG ACGGTGAGTG CACTGTGGGT GATGGGAGGT
GGACCGCTGG AAAGCTTCTC TATTGCGATG TTTATCGGAA TTTTGACAGG AACCTGGTCA
TCGATATCGG TGGGGACCTG TTTACCTGAG CTCTTTGGGG TTAACTCGGA ACATTATAAG
CTCATACCTA TACCTGAAAC GCCGTAA
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| Protein sequence | MNTNTNTNTM NRLTKWRYFS SCISLVLMIL SLTVISVKGF NWGLDFTGGV VTEVRIDSDI
KANQIESLLG KMSEQEVSVI SAGEPGRWVL RYSQAETSGD VSANALDIEQ VLASLHSGVE
VLNSSIVGPQ VGQELAEQGG LALLVAMLCI LGYLSFRFEW RLASGALFAL FHDVIFVLAF
FSLTQMEFNL TVLAAVLAIL GYSLNDSIII ADRIRELLTS KPKMAISDVC TSAVKATFSR
TMVTSGTTLM TVSALWVMGG GPLESFSIAM FIGILTGTWS SISVGTCLPE LFGVNSEHYK
LIPIPETP
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