| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3396 |
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| Symbol | |
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| ID | 5610348 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4139044 |
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| End bp | 4141023 |
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| Gene Length | 1980 bp |
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| Protein Length | 659 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640934336 |
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| Product | microtubule-severing ATPase |
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| Protein accession | YP_001475128 |
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| Protein GI | 157376528 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0465] ATP-dependent Zn proteases |
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| TIGRFAM ID | [TIGR01241] ATP-dependent metalloprotease FtsH |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000536506 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.000042164 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | TTGAGTGATA TGGCAAAAAA TTTAATTCTC TGGGTAGTCA TCGCCGTTGT GTTGATGTCT
GTGTTTCAGG GTTACTCCCC CTCTTCATCC ACAGCGTTGA AGATGGATTA TTCCGCTTTT
TTAGATGATG TTCGTAGTGG ACAGATAAAT ACTGTCGAAA TAAAAAGCGA TCAACGTACG
ATCGAAGGGA CTAAGCGTAC CGGAGAGAAG TTCACTACTA TCATGCCTAT GGAAGATAAA
GATCTGATTA ATGATCTCGA TCGTAAAGGC ATAACCATGA AGGGGCAGGA AGCTGAAGAG
TCTGGGTTCT TAACTCAAAT TTTCATCTCG TGGTTCCCTA TGTTACTGCT CATCGGTGTA
TGGATATTCT TCATGCGTCA GATGCAGGGC GGTGGTGGAA AAGGCGCCAT GTCTTTTGGT
AAGAGTAAAG CTAAGTTGAT GAGTGAAGAC CAGATTAAAA CAACTTTCTC AGACGTCGCC
GGTTGCGACG AAGCTAAGGA AGACGTTAAA GAGCTGGTTG ATTACCTGAA AGAGCCGACT
AAATTCCAAA AGTTGGGTGG TCGAATTCCT ACCGGTGTGC TTTTAGTCGG TCCTCCTGGT
ACGGGTAAAA CCTTGCTGGC TAAAGCCATT GCCGGTGAAG CAAAGGTGCC ATTTTTTACC
ATTTCAGGTT CTGATTTTGT CGAGATGTTT GTTGGTGTTG GTGCCTCTCG TGTACGTGAC
ATGTTTGAGC AAGCTAAAAA GTCTGCCCCA TGTATCATCT TTATCGATGA GATCGATGCC
GTAGGTCGCC AGCGTGGTGC GGGTGTCGGT GGTGGTCACG ATGAGCGCGA ACAGACACTG
AACCAGTTGT TGGTTGAGAT GGATGGTTTC GAAGGTAATG AAGGTGTCAT CGTTATTGCT
GCGACTAACC GTCCGGATGT ACTGGATGCT GCACTGCTTC GTCCTGGCCG TTTTGACCGT
CAGGTGGTCG TTGGTTTACC TGACGTTCGT GGTCGTGAGC AGATCCTTAA AGTGCATATG
CGTAAAGTGC CTCTTGCCGA TGATGTTAAA GCGAGTGTTA TTGCTCGTGG TACGCCCGGC
TTCTCTGGTG CCGACTTGGC AAACTTAGTG AACGAAGCCG CGCTGTTTGC TGCGCGTGGT
AGTCGCCGTA TCGTTGGTAT GGAAGAGTTT GAGAGCGCGA AAGATAAGAT CATGATGGGT
GCAGAGCGCC GCACTATGGT GATGTCTGAA GAAGATAAAG AGATGACGGC TTATCATGAA
GCGGGCCATG CCATCGTTGG TTGCCTCGTA CCTGAGCACG ACCCTGTGCA CAAGGTGACG
ATTATTCCAC GCGGACGTGC CTTAGGCGTG ACTTTCTTCT TGCCTGAAGC CGATGCGATA
AGTCAGAGTC GACGTAAGTT AGAGAGTCAA ATTTCTGTGG CTTATGGTGG ACGTTTGGCC
GAAGAGATCA TCTATGGTAG TGAGAGAGTC TCTACCGGTG CTTCTCAGGA TATTAAGTAT
GCGACTTCGA TTGCCCGTAA TATGGTGACT CAGTGGGGCT TCTCTGAGAA GTTAGGTCCG
GTACTTTATG CCGAAGATGA AAATGAAGTA TTTCTGGGTC GAAGCATGGG TAAGACTCAG
CATATGTCTG ATGAAACTGC CAGCATCATC GATGCGGAAG TCAAAACGAT TATCGATAGT
AACTATGAGC GAGCACAGAG CTTCCTCAAT GATAATATGG ACATTCTTCA TGCGATGAAA
GATGCGTTGA TGAAGTATGA AACCATAGAT TCAACGATGA TCGATGATCT GATGGGGCGC
CGAGAGGTTA GTGCACCAGC GGATTGGAAT ATGGATGATA ATGGTTCAAG CAATGATGAT
ACCGGTGGTA AGCCTGCTGA AACTGATAAA AAGGATTCAT CTGAAGATGA AGTTAAACCT
GAGTCAGAGC AGTGTGCCGC TCCCGATGTT AAAGACATTG ATGAGTCAAC GGCTAAATAA
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| Protein sequence | MSDMAKNLIL WVVIAVVLMS VFQGYSPSSS TALKMDYSAF LDDVRSGQIN TVEIKSDQRT
IEGTKRTGEK FTTIMPMEDK DLINDLDRKG ITMKGQEAEE SGFLTQIFIS WFPMLLLIGV
WIFFMRQMQG GGGKGAMSFG KSKAKLMSED QIKTTFSDVA GCDEAKEDVK ELVDYLKEPT
KFQKLGGRIP TGVLLVGPPG TGKTLLAKAI AGEAKVPFFT ISGSDFVEMF VGVGASRVRD
MFEQAKKSAP CIIFIDEIDA VGRQRGAGVG GGHDEREQTL NQLLVEMDGF EGNEGVIVIA
ATNRPDVLDA ALLRPGRFDR QVVVGLPDVR GREQILKVHM RKVPLADDVK ASVIARGTPG
FSGADLANLV NEAALFAARG SRRIVGMEEF ESAKDKIMMG AERRTMVMSE EDKEMTAYHE
AGHAIVGCLV PEHDPVHKVT IIPRGRALGV TFFLPEADAI SQSRRKLESQ ISVAYGGRLA
EEIIYGSERV STGASQDIKY ATSIARNMVT QWGFSEKLGP VLYAEDENEV FLGRSMGKTQ
HMSDETASII DAEVKTIIDS NYERAQSFLN DNMDILHAMK DALMKYETID STMIDDLMGR
REVSAPADWN MDDNGSSNDD TGGKPAETDK KDSSEDEVKP ESEQCAAPDV KDIDESTAK
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