| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3393 |
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| Symbol | |
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| ID | 5610092 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4135305 |
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| End bp | 4136087 |
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| Gene Length | 783 bp |
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| Protein Length | 260 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640934333 |
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| Product | triosephosphate isomerase |
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| Protein accession | YP_001475125 |
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| Protein GI | 157376525 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0149] Triosephosphate isomerase |
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| TIGRFAM ID | [TIGR00419] triosephosphate isomerase |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000164415 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0003141 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGCACTCA GACGTCCAAT GGTCGCTGGT AACTGGAAAA TGAATGGCAG TGCGCAATTA
GCGCTGGAGT TATTCAATAA ATTCGCTACT AAGCTTCAAG ATGATTCAGC GGAAGTGGTC
TTATGCCCAC CAAGCATATA TCTAGAAAGT GTACGTCAGC AGTTAGACGC TAATAAAGAC
GCTTTAAATG GTTGTCTTGT CAGAATGGGC GCACAAAACC TGAGTCAACA TGACTTCGGT
GCTTATACTG GTGAAGTGTC AGGGCAGATG TTAAAGGATT CAGGATGCCG ATATGTTATT
ATCGGACACT CCGAACGTCG CCGTATGTAC GGAGAGACGA GTGATATCGT TGCTGAGAAG
TTTGCAGCAG CACAAAAACA TGGTTTGACC CCAATACTTT GTGTTGGTGA GTCCGGTCCA
GCTAGAGAAG CGAGAAGAAC TTTTGAAGTT ATCGCCGAAG AGTTAGATGT GGTCATTGAA
AAAAATGGCA CCATGGCATT TGATAACGCG ATTATCGCCT ATGAGCCTTT ATGGGCTGTA
GGAACCGGTA AGAGTGCTAC GCCAGAGCAG GCACAGGAAG TTCATGCGTT TATACGCAAA
CGCCTCTCTG AAGTGTCTCC ATATATTGGA GAAAATATCA GGATTTTGTA CGGTGGTAGC
GTAACACCGA GTAATGCTGC AGATCTATTT GCACAACCTG ATGTAGATGG TGGATTGATT
GGCGGTGTGA GCTTAAACTC TACCGAGTTT CTAAGTTTAT GTTCCATAGC GATGAGCGCA
TAA
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| Protein sequence | MALRRPMVAG NWKMNGSAQL ALELFNKFAT KLQDDSAEVV LCPPSIYLES VRQQLDANKD
ALNGCLVRMG AQNLSQHDFG AYTGEVSGQM LKDSGCRYVI IGHSERRRMY GETSDIVAEK
FAAAQKHGLT PILCVGESGP AREARRTFEV IAEELDVVIE KNGTMAFDNA IIAYEPLWAV
GTGKSATPEQ AQEVHAFIRK RLSEVSPYIG ENIRILYGGS VTPSNAADLF AQPDVDGGLI
GGVSLNSTEF LSLCSIAMSA
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