Gene Ssed_3388 details

Gene Information

• Locus tag: Ssed_3388
• Symbol: rbfA
• ID: 5610145
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella sediminis HAW-EB3
• Kingdom: Bacteria
• Replicon accession: NC_009831
• Strand: -
• Start bp: 4129196
• End bp: 4129627
• Gene Length: 432 bp
• Protein Length: 143 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 640934326
• Product: ribosome-binding factor A
• Protein accession: YP_001475120
• Protein GI: 157376520
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0858] Ribosome-binding factor A
• TIGRFAM ID: [TIGR00082] ribosome-binding factor A

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 0.990819
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 11
• Fosmid unclonability p-value: 0.00369045
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGGCAAGAG AATTTAGTCG AACACGTCGT ATTGCACAGC AGTTACAACA AGAGTTGGCT 
CAAGTGTTAC AGCGTGATAT GAAAGACCCT CGTATCGGTT TTGTTACAGT CAATGACGTT 
GATGTATCAC GTGACTTGAG CTACGCGAAG GTTTATGTGA CTTTCTTTGA AGAAGACGAA 
AAGCTTGTTC AAGAGAAGGT TGAGGCGTTA GATGCTGCTG CCGGTTACAT ACGTTCATTA 
GTCGCAGGGC GTATGAAATT GCGGGTCATG CCTGAACTTC GTTTTATCTA CGACAGCTCG 
TTGGTAGAAG GCATGCGTAT GTCTAACCTG GTTTCTCGTG TGATCAGCGA TGATGAAGCA 
AAGCAGAAGC AACATGGTGA TCAGCAAGAT GTATCGCAAA GCAGCGATGA CAAGTCGGAA 
GGTGAAGACT AA 

 

Protein sequence

MAREFSRTRR IAQQLQQELA QVLQRDMKDP RIGFVTVNDV DVSRDLSYAK VYVTFFEEDE 
KLVQEKVEAL DAAAGYIRSL VAGRMKLRVM PELRFIYDSS LVEGMRMSNL VSRVISDDEA 
KQKQHGDQQD VSQSSDDKSE GED