| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3384 |
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| Symbol | |
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| ID | 5610353 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4123013 |
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| End bp | 4125127 |
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| Gene Length | 2115 bp |
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| Protein Length | 704 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640934322 |
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| Product | polynucleotide phosphorylase/polyadenylase |
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| Protein accession | YP_001475116 |
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| Protein GI | 157376516 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
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| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000712799 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00355536 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGTTCACG TGAATCCAAT CGTAAAGAGT TTTGAATATG GTCAGCACAC AGTCACGCTA
GAGACTGGTG TTATTGCACG TCAAGCCGAT GCCGCCGTTT TGGCAAGTAT GGGTGATACC
ACAGTATTGG TTACTGTTGT TGGGAAGAAA TTTGAAGAGC CAGGTCGTGA CTTTTTTCCA
CTAACTGTTA ATTACCAGGA AAAGACTTAC GCTGCGGGTA AGATCCCTGG TGGTTTTTTC
AAGCGTGAAG GCCGTCCATC TGAAAGCGAA ACATTGATTG CCCGCCTTAT TGACCGTCCA
ATCCGTCCAC TATTCCCAAA TGGCTTCAAG AATGAAGTTC AGGTAATTAT CACAGTAGTT
TCTGTCGATC CTGAAATCAA CCCTGATGTT ATTTCGATGA TTGGTACTTC AGCTGCATTG
GCTATATCTG GTCTGCCTTT CAATGGCCCA CTAGGTGTGG CACGTGTTGG TTATACTGAC
GGCGAATATG TTCTTAACCC GAATGTCAGT CAACTTGTTG ATAGTGATCT TGACCTGATT
GTTGCCGGTA CTCAAGGTGC TGTCTTGATG GTTGAGTCTG AAGCGGCTGC ACTTCCAGAA
GAAGTGATGT TAGGTGGTGT TGTTTACGGA CACGACCAGC AGCAAGTTGT TATCAGTGCC
ATTAACGAGC TAAAAGCTGA AGCAAGCAAG CCTGCATGGG ATTGGACAGC TCCAGTTCAA
GACGCAGACC TTGTTGCTAA AATTAAAGAT TTAGCCGAGG CCGAGATGGC CGCTGCTTAC
CAAATTGAAG TTAAGCAAGA TCGTTACACT CAAGTTGGCG TTGTAAAGTC TGCTGCTAAA
GAAGCATTAT TGGCTGAAAA CCCAGAAGCT GATTTGCGCG AAATCGACGG CCTTCTTGGT
AGCTTAGAGA AGCAAGTAGT ACGTAGCCGT ATTATTGCCG GCAACCCGCG TATCGATGGT
CGTGAACCTG ATATGGTTCG TGGCTTGAAC GTGATGGCTG GTGTACTGCC ACGTACCCAC
GGTAGTGCTT TGTTCACTCG TGGTGAAACT CAGGCACTAG TGACTTGTAC TCTAGGTACG
GAGCGTGATG CTCAGAAAGT TGACAGCATC ATGGGCGAGT ACACTAACCG CTTTATGCTG
CACTATAACT TCCCTCCATA TTCTGTTGGT GAAACAGGTT TTGTTGGTTC ACCTAAGCGT
CGCGAAATTG GTCACGGTAA GCTAGCATGG CGCGGTATCA ATGCCGTTAT GCCTTCTGCT
GAAGAGTTCC CATACAGCGT TCGTGTTGTA TCTGAAATCA CTGAATCAAA CGGTTCAAGC
TCTATGGCTT CTGTTTGTGG TACTTCACTT GCTCTTATGG ATGCGGGTGT ACCAATTAAG
ACCTCTGTTG CTGGTATCGC TATGGGTCTG GTTAAAGAAG GTGACGATTT CGTCGTTCTT
TCTGACATCT TGGGTGATGA AGATCATCTT GGTGATATGG ACTTTAAAGT TGCTGGTACT
CGTGATGGTA TTACTGCACT GCAGATGGAT ATCAAGATTG AAGGTATCAA TAAAGAGATC
ATGCAGATCG CATTGCAGCA AGCCTATGGC GCACGTGTTC ATATCCTGAA TGTTATGGAC
CAGGCTATCG GTGAGCACCG TGATGATATC TCTGATCACG CTCCACGTAT CACAACGCTT
AAGATTAACC CTGAGAAGAT CCGTGACGTG ATTGGTAAAG GTGGTGCAAC TATCCGCGCA
CTTACCGAAG AGACGGGTAC AACTATCGAA CTTGAAGATG ACGGTACCGT TAAGATCGCA
TCTGCAAACG GTGATGCAAC GAAAGAAGCA ATCCGTCGTA TCGAAGAGAT CACTGCAGAA
GTTGAAGTCG GTACTATCTA CAATGGTAAA GTTGTTCGTA TCGTTGATTT CGGTGCGTTC
GTTACTATTC TTCCGGGTAA AGATGGTCTG GTTCATATCT CTCAGATTGC TGAAGAGCGT
GTAGCTAACG TATCTGACTA CCTACAAGTA GGTCAGGAAG TGAAGGTTAA GGTGATGGAA
GTCGATCGCC AGGGCCGTGT ACGTCTTTCT ATGAAAGAAG CTGCGCCTAA AGCTGAAGCA
GCTCCAGCCG AGTAA
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| Protein sequence | MVHVNPIVKS FEYGQHTVTL ETGVIARQAD AAVLASMGDT TVLVTVVGKK FEEPGRDFFP
LTVNYQEKTY AAGKIPGGFF KREGRPSESE TLIARLIDRP IRPLFPNGFK NEVQVIITVV
SVDPEINPDV ISMIGTSAAL AISGLPFNGP LGVARVGYTD GEYVLNPNVS QLVDSDLDLI
VAGTQGAVLM VESEAAALPE EVMLGGVVYG HDQQQVVISA INELKAEASK PAWDWTAPVQ
DADLVAKIKD LAEAEMAAAY QIEVKQDRYT QVGVVKSAAK EALLAENPEA DLREIDGLLG
SLEKQVVRSR IIAGNPRIDG REPDMVRGLN VMAGVLPRTH GSALFTRGET QALVTCTLGT
ERDAQKVDSI MGEYTNRFML HYNFPPYSVG ETGFVGSPKR REIGHGKLAW RGINAVMPSA
EEFPYSVRVV SEITESNGSS SMASVCGTSL ALMDAGVPIK TSVAGIAMGL VKEGDDFVVL
SDILGDEDHL GDMDFKVAGT RDGITALQMD IKIEGINKEI MQIALQQAYG ARVHILNVMD
QAIGEHRDDI SDHAPRITTL KINPEKIRDV IGKGGATIRA LTEETGTTIE LEDDGTVKIA
SANGDATKEA IRRIEEITAE VEVGTIYNGK VVRIVDFGAF VTILPGKDGL VHISQIAEER
VANVSDYLQV GQEVKVKVME VDRQGRVRLS MKEAAPKAEA APAE
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