| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3382 |
|---|
| Symbol | prfC |
|---|
| ID | 5609931 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 4120066 |
|---|
| End bp | 4121646 |
|---|
| Gene Length | 1581 bp |
|---|
| Protein Length | 526 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640934320 |
|---|
| Product | peptide chain release factor 3 |
|---|
| Protein accession | YP_001475114 |
|---|
| Protein GI | 157376514 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG4108] Peptide chain release factor RF-3 |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00503] peptide chain release factor 3 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00211559 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.00272137 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGGCA ATAAAGTTGA GGTCGACAAG CGTCGTACTT TCGCCATTAT CTCTCACCCC
GATGCGGGTA AAACCACCAT TACCGAGAAG GTACTTTTAT TTGGCAACGC GCTGCAGAAG
GCTGGTACTG TAAAAGGTAA GAAGTCCGGG CAACATGCGA AATCTGACTG GATGGAGATG
GAGAAAGATC GTGGTATTTC GATCACAACC TCTGTGATGC AGTTCCCCTA TAACGGTGCG
CTCGTTAACC TTCTCGATAC TCCGGGTCAC GAAGATTTCT CTGAGGATAC TTATCGTACT
CTTACTGCCG TTGACTCATG TTTAATGGTA ATTGACTCGG CGAAAGGTGT TGAGCAACGT
ACGATTAAGC TGATGGAAGT GACACGACTT CGTGATACGC CTATCGTCAC CTTTATGAAC
AAACTCGATC GTGATATACG TGATCCATTA GAGTTGATGG ATGAGGTTGA GAAGGTACTG
AATATTGCTT GTGCCCCTAT TACCTGGCCA ATTGGTTGCG GTAAAGAGTT CAAGGGTGTT
TATCATCTTC TACGTGATGA AGTGATCCTC TATCAGAGCG GTCAGGGCCA CACGATTCAG
GATTCGACAA TCATTAAGGG GTTAGATAAC CCTGAACTGG ATGCTGCCAT CGGCACTTAC
GCAGCAGAGG TGCGTGAGGA GCTGGAGTTA GTTCTTGGCG CATCGAACGA GTTCGACCTT
GAGCTGTTTC TTGCCGGTGA GTTGACTCCC GTTTACTTCG GTACAGCCTT AGGTAACTTT
GGTGTGGATC ATATTCTCGA TGGTATCGTT GAATGGGCGC CTAAACCACA GGCACGCGAG
ACCGAAGTCA GAGAAGTGCA GCCTGAAGAT GAAAAATTCA GTGGTTTTGT ATTTAAGATC
CAAGCCAACA TGGATCCTAA ACATAGAGAC CGGGTGGCAT TTATGCGCGT CTGTTCCGGC
CGTTACGAAC AAGGCATGAA GATGCATCAC GTTCGTCTGG GTAAAGATGT GAACGTCAGC
GATGCTTTGA CCTTTATGGC GGGCGATCGA AACCGCGCCG AAGTTGCCTA CCCGGGTGAC
ATCATAGGTC TACACAATCA CGGAACTATG CGTATCGGTG ATACCTTTAC TCAAGGTGAA
AAACTGCGTT TTACCGGTAT ACCTAACTTC GCACCAGAAA TGTTTCGTCG TATACGTTTG
AAAGACCCTT TGAAACAGAA GCAGTTGCTG AAAGGACTGG TTCAGCTTTC CGAAGAGGGT
GCGGTTCAGG TCTTCAGGCC TATCGATACT AACGACTTGA TCGTTGGTGC CGTCGGTATA
CTCCAGTTTG AGGTCGTTGT TGGCCGCTTA AAATCTGAGT ATAAGGTTGA AGCAATCTAC
GAAGCTATCA GCGTCTCGAC CGCCCGTTGG GTGTATTGTG ATGATGAAAG AAAACTTGAA
GAGTTCAGAC GTAAGTGCAG CACCAACTTA GCACTCGATG GTGGTGATAA CTTGACTTAC
ATTGCGCCTA CTATGGTTAA CCTGAATCTC TCCATGGAAC GCTATCCGGA TATTAAGTTC
GCGAAGACGC GTGAGAATTA A
|
|---|
| Protein sequence | MSGNKVEVDK RRTFAIISHP DAGKTTITEK VLLFGNALQK AGTVKGKKSG QHAKSDWMEM
EKDRGISITT SVMQFPYNGA LVNLLDTPGH EDFSEDTYRT LTAVDSCLMV IDSAKGVEQR
TIKLMEVTRL RDTPIVTFMN KLDRDIRDPL ELMDEVEKVL NIACAPITWP IGCGKEFKGV
YHLLRDEVIL YQSGQGHTIQ DSTIIKGLDN PELDAAIGTY AAEVREELEL VLGASNEFDL
ELFLAGELTP VYFGTALGNF GVDHILDGIV EWAPKPQARE TEVREVQPED EKFSGFVFKI
QANMDPKHRD RVAFMRVCSG RYEQGMKMHH VRLGKDVNVS DALTFMAGDR NRAEVAYPGD
IIGLHNHGTM RIGDTFTQGE KLRFTGIPNF APEMFRRIRL KDPLKQKQLL KGLVQLSEEG
AVQVFRPIDT NDLIVGAVGI LQFEVVVGRL KSEYKVEAIY EAISVSTARW VYCDDERKLE
EFRRKCSTNL ALDGGDNLTY IAPTMVNLNL SMERYPDIKF AKTREN
|
|---|
| |