| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3381 |
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| Symbol | |
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| ID | 5609930 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4118890 |
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| End bp | 4119726 |
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| Gene Length | 837 bp |
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| Protein Length | 278 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640934319 |
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| Product | TatD-related deoxyribonuclease |
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| Protein accession | YP_001475113 |
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| Protein GI | 157376513 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0084] Mg-dependent DNase |
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| TIGRFAM ID | [TIGR00010] hydrolase, TatD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000756036 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00541982 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGCCAACTC CTACCTCACA TCTAAAGCAT ACTTCACCTC AAGTTAATGG CTCATCACCA
ACAAAACTGA GAATGATTGA CAGCCACGCC CATCTGGACT TTCCTGAATT CGATATCGAC
CGTGAACAGG TATTTGATGC AATGAGAAGC GCCGGAATAG AGTCCGCCAT CATTCCCGGG
GTGTCACCCG AGCATTGGGA TAATCAAATC GCAGTAGCAA GGCAGTTTAA CTGCCCTTAT
GCGCTGGGGA TCCACCCCTG GTATTGTCAC TCAGATTCTT TAACGTTATT CGATGACCTA
AAAGAGCGGG TCTCAAGGTG CTGCGATGAT GTAAAACTGG TCGCTATAGG AGAGTGTGGT
CTGGATAAGT TACGAAAAAG TAATTGGCAG GCACAGTTGA TTCAGTTCGA ACGTCAACTG
ACACTGGCAA AAGAGCTGGA ATTGCCTATT ATTTTACATG TTGTTAAAGC TCACAACGAG
ATGCTCACGC TATTAAAGCG CTATGCTCTG CCTAAAGGTG GCGTCATACA TGGTTTTTAT
GGTGGGGTTG AGCTTGCTAA CGAGTATATT CGACTGGGTT ACAAGTTGGG GATCGGTGGG
TTAATTTTGA ACGATAGGGC CTTGAAGCTT AAAAATTGCA TTGCAAGCAT TTCTTTAGAT
TCTATCCTTA TCGAGACAGA TTCTCCCTCT ATGGCACCCG AAAATTCGGC TGAAACACGC
AATACACCGC TTGTTTTGCA CTCAGTCGTG AAAGAAATAG CAAATTTACA GAAAAAAACT
AGTGTTCTAA TATCAGAACA TGCTTTTCTC AATGCGGCGC AACTCTTTGA CCTTTAA
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| Protein sequence | MPTPTSHLKH TSPQVNGSSP TKLRMIDSHA HLDFPEFDID REQVFDAMRS AGIESAIIPG
VSPEHWDNQI AVARQFNCPY ALGIHPWYCH SDSLTLFDDL KERVSRCCDD VKLVAIGECG
LDKLRKSNWQ AQLIQFERQL TLAKELELPI ILHVVKAHNE MLTLLKRYAL PKGGVIHGFY
GGVELANEYI RLGYKLGIGG LILNDRALKL KNCIASISLD SILIETDSPS MAPENSAETR
NTPLVLHSVV KEIANLQKKT SVLISEHAFL NAAQLFDL
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