| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3380 |
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| Symbol | |
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| ID | 5609929 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4117453 |
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| End bp | 4118712 |
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| Gene Length | 1260 bp |
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| Protein Length | 419 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640934318 |
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| Product | nucleoside transporter |
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| Protein accession | YP_001475112 |
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| Protein GI | 157376512 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG1972] Nucleoside permease |
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| TIGRFAM ID | [TIGR00804] nucleoside transporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000393425 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00583621 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGATATTT TAATGAGTTT GGTAGGGGTG GTCACCCTAC TTGCGATAGC GTTCGGGTTA
TCGAATAATA GAAAAGCAAT TAACAAGCGT ACCGTTTTTG GTGCATTAGC AATTCAGGCC
GCTTTCGGTG GTTTCGTTTT ATATGTTCCA GTCGGTAAAG ATATTCTAAA GACTATTTCA
GATGGCGTGT CTAGCGTTAT CGGTTATGCT CAAAACGGTA TCGGTTTCTT GTTCGGTGAT
TTGGCTAACT TTAAAGTTGG TTTCATTTTC GCCATCAACG TTTTACCAGT CATTGTTTTC
TTCTCTTCTC TTATTGCTGT TCTTTATTAC CTTGGCGTAA TGCAGTGGAT TATCCGTATT
ATCGGTGGTG CACTACAGAA AGCTCTTGGT ACAAGCCGTA CAGAGTCTAT GTCAGCAACA
GCTAACATCT TCGTTGGTCA AACTGAAGCA CCACTAGTTG TACGTCCGTT TATCGCGACT
ATGACTAACT CTGAGCTATT TGCCATCATG GTAGGTGGTT TAGCGTCTAT TGCTGGTTCA
GTAATGGCCG GTTATGCGCA GATGGGTGTA CCAATCGAAT ATCTAGTTGC CGCTTCATTC
ATGGCAGCAC CAGGTGGTCT ATTAATGGCT AAGCTGATGC ACCCTGAAAC TGAAGAAGCT
AAGAACGATA TGGAAGACCT TCCAGAAGAC CCTGATAAGC CAGCTAACGT TATCGACGCT
GCTGCTGCAG GTGCTTCTTC AGGTATGCAT CTAGCACTTA ACGTTGGTGC AATGCTTCTA
GCGTTCGTTG GTTTGATTGC TATGATGAAC GGCATTATCG GTGGTCTTGG CGGACTAGTC
GGTATGGAAG GTCTAACTCT TGAATTGATT CTTGGTTATA TCTTCATGCC TCTTGCATTC
CTTATCGGTG TGCCTTGGAG CGAAGCACTC GTTGCCGGTT CTTTCATTGG TCAGAAGATT
GTTGTTAACG AATTCGTTGC CTACTTGAAC TTCGCTCCAT ACATGAAAGA TATCGCTGAT
GGCGGCATGG TAGTTGCTGA AACAGGTCTT GCTATGACAG ATAGAACAAA AGCGATTATC
TCTTTTGCTC TTTGTGGCTT CGCTAACCTA TCTTCAATCG CGATTCTTCT CGGTGGTCTA
GGTGCTATGG CGCCAACTCG TCGTCACGAC TTAGCTAAGC TAGGTATGCG TGCAGTAGTT
GCAGGTTCTC TTGCTAACTT GATGAGTGCG ACACTAGCGG GTCTATTCCT GGCACTATAA
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| Protein sequence | MDILMSLVGV VTLLAIAFGL SNNRKAINKR TVFGALAIQA AFGGFVLYVP VGKDILKTIS
DGVSSVIGYA QNGIGFLFGD LANFKVGFIF AINVLPVIVF FSSLIAVLYY LGVMQWIIRI
IGGALQKALG TSRTESMSAT ANIFVGQTEA PLVVRPFIAT MTNSELFAIM VGGLASIAGS
VMAGYAQMGV PIEYLVAASF MAAPGGLLMA KLMHPETEEA KNDMEDLPED PDKPANVIDA
AAAGASSGMH LALNVGAMLL AFVGLIAMMN GIIGGLGGLV GMEGLTLELI LGYIFMPLAF
LIGVPWSEAL VAGSFIGQKI VVNEFVAYLN FAPYMKDIAD GGMVVAETGL AMTDRTKAII
SFALCGFANL SSIAILLGGL GAMAPTRRHD LAKLGMRAVV AGSLANLMSA TLAGLFLAL
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