| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3377 |
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| Symbol | deoA |
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| ID | 5609955 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4113457 |
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| End bp | 4114788 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934315 |
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| Product | thymidine phosphorylase |
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| Protein accession | YP_001475109 |
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| Protein GI | 157376509 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0213] Thymidine phosphorylase |
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| TIGRFAM ID | [TIGR02643] thymidine phosphorylase
[TIGR02644] pyrimidine-nucleoside phosphorylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000359678 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00317006 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTTCTAG CTCAAGAGAT TATTCGTAAG AAGCGCAATG CTGAGGCGTT GTCAAAAGAA
GAGATTCAAT TTTTCGTTAA AGGTATTACC GATAACACGG TTTCAGAAGG TCAGATAGCA
GCGCTGGGTA TGGCGGTCTA TTTTAATGAC ATGAACATGG ATGAGCGTAT TGCGTTAACG
ACATCTATGC GTGACTCGGG TACCGTTCTA AACTGGAAAT CACTGGACCT TGATGGTCCT
ATCATCGATA AGCACAGCAC TGGCGGTGTT GGTGATGTTA TCAGCTTGAT GCTTGGCCCT
ATGGCTGCAG CATGTGGCGG ATATGTTCCG ATGATCTCAG GCCGTGGCCT TGGTCATACC
GGTGGAACGT TAGATAAGTT TGATGCTATT CCCGGTTACC AAACCGAGCC AGATAGTGCA
CTGTTCAGAA AAGTAGTTAA AGAAGCCGGT GTCGCCATTA TTGGCCAGAC GGGCGACTTG
GTTCCTGCCG ATAAGCGTTT CTACTCGATT CGTGATAACA CCGCGACTGT CGAGTCTATC
TCACTCATTA CCGCTTCAAT TCTCTCTAAG AAACTGGCTG CTGGCCTCGA TGCTCTTGCT
ATGGACGTTA AAGTCGGTAG TGGTGCGTTT ATGCCTACCT ATGAAGCATC TGAAGAGTTA
GCACGTAGTA TCACCGCCGT TGCAAACGGT GCGGGAACTA AGACTACAGC GCTGCTTACC
GATATGAACC AGGTATTGGC TTCATGTGCG GGTAATGCCG TTGAAGTTAA AGAAGCGGTC
GATTTCTTAA CGGGTGCATA CCGTAACCCT CGTCTCTATG AAGTGACCAT GGGCCTATGT
GCAGAGATGC TGCAGTTAGG TGGCATCGCT TCGAGCGAAG CTGAAGCGAG AGAGAAGCTA
AATCGCGTTC TCGACAACGG TAAGGCGGCT GAGATATTTG GTCGTATGAT CTCTGGTCTT
GGTGGACCTG CAGATTTTAT CGAAAATACG GGTCTGTATC TGCCAGAATC TAAAATTATC
CGTCCTGTCT ATGCTGACCA AACCGGTTTT GCTTCGGCGA TGGATACTCG TGAGCTCGGT
CTTGCGGTTG TTACCTTAGG TGGTGGCCGT CGTAAGCCAG GTGACGCACT CGATTACAGT
GTCGGTCTGA CTAAAGTTTG TGCTTTAGGT GATGAGATTT CTGCTGATAA GCCAATCGCC
TTCATTCATG CGCAAACTGA GAATGCGTTT GCTGAAGCTG AAGCTGCGGT TAAGAAAGCC
ATCCACGTAG GCGAGACGAA ACCAGAAAAG ACTCCTGAAA TATATCGCTA TATTCGTGAG
TCAGATCTGT AA
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| Protein sequence | MFLAQEIIRK KRNAEALSKE EIQFFVKGIT DNTVSEGQIA ALGMAVYFND MNMDERIALT
TSMRDSGTVL NWKSLDLDGP IIDKHSTGGV GDVISLMLGP MAAACGGYVP MISGRGLGHT
GGTLDKFDAI PGYQTEPDSA LFRKVVKEAG VAIIGQTGDL VPADKRFYSI RDNTATVESI
SLITASILSK KLAAGLDALA MDVKVGSGAF MPTYEASEEL ARSITAVANG AGTKTTALLT
DMNQVLASCA GNAVEVKEAV DFLTGAYRNP RLYEVTMGLC AEMLQLGGIA SSEAEAREKL
NRVLDNGKAA EIFGRMISGL GGPADFIENT GLYLPESKII RPVYADQTGF ASAMDTRELG
LAVVTLGGGR RKPGDALDYS VGLTKVCALG DEISADKPIA FIHAQTENAF AEAEAAVKKA
IHVGETKPEK TPEIYRYIRE SDL
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