| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3376 |
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| Symbol | |
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| ID | 5609954 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4112226 |
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| End bp | 4113443 |
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| Gene Length | 1218 bp |
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| Protein Length | 405 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640934314 |
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| Product | phosphopentomutase |
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| Protein accession | YP_001475108 |
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| Protein GI | 157376508 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1015] Phosphopentomutase |
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| TIGRFAM ID | [TIGR01696] phosphopentomutase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.301348 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0494326 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACGTA CATTTATTAT GATGTTGGAC TCATTTGGTA TCGGAGCGGC GGCAGATGCT
GAAGCGTTCG GTGATACCGG GTCTGATACC TTTGGCAATA TCGCAAAAGC GTGTGCCGAA
GGAAAAGCAA ACGAAGGTCG TGAAGGCCCG TTGAAGCTAC CTAATCTTGC ACGTCTGGGC
CTTGCCCAAG CATCGAAAGA GAGCACGGGC CAGCTTCCAG CCGGTTTCAG TGACGATGTT
GAGATCATTG GCGCCTATGG CCATGCCGAT GAACTCAGTA CCGGTAAAGA TACGCCTAGT
GGACACTGGG AGTTAGCGGG TGTACCTGTT CTGTATGAAT GGGGATACTT CAGCGACCAT
ACCAACTCTT TCCCGAAAGA GCTGACTGAT AAAATTCTAG CCAGAGCCGG CTTGTCAGAT
TACTTAGGTA ACTGCCATGC ATCGGGTACT GCGATTTTGG AAGAGCTCGG TAACGAGCAT
ATGACCAGTG GCTTGCCAAT TTTTTACACT TCGGCAGACT CTGTATTCCA GGTGGCGTGT
CACGAAGAGA CTTTCGGACT AGAGAATCTT TATACTTTGT GTCAGATCGT TCGTGAAGAG
CTTGAGCCAT ATAACATTGG TCGCGTAATT GCCCGTCCTT TCGTTGGCAC GGGTCCTAGC
GACTTTGCTC GTACGGGTAA CAGACGCGAT TACGCGGTTG AGCCGCCAGC AAAGACGGTA
CTCGATAAAC TTAAAGATTC CGGTGGTGAA GTGGTGAGTG TCGGTAAGAT TGCCGACATC
TATGCACACT GCGGTATCAC TAAGAAAATC AAAGCATCTG GCCTCGAAGC ATTGTTTGAT
GCAACGCTCG AAGAGCTGAA AGTCGCAGGT GATAACACGA TAGTGTTTAC TAACTTCGTT
GACTTCGATT CTCACTTCGG TCACAGACGT GATGTTGCCG GTTACGCGAG AAGCCTCGAG
TATTTCGATT CTCGCCTGCC TGAACTGATG GCGCTGATGG GCGAAGACGA CCTATTACTG
CTAACTGCAG ACCATGGTTG TGATCCGACT TGGCCAGGAA CTGACCATAC TCGTGAACGT
GTGCCAGTAT TGGCATACGG AGCAGGACTA GAAGCTGGCT CATTAGGCCG CCGTAAGAGT
TTTGCCGACA TGGGTCAATC CATAGCAAGT TACTTTAAAC TTGAGCCTAT GGAATATGGC
GAGTCGTTTA TTAAGTAA
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| Protein sequence | MKRTFIMMLD SFGIGAAADA EAFGDTGSDT FGNIAKACAE GKANEGREGP LKLPNLARLG
LAQASKESTG QLPAGFSDDV EIIGAYGHAD ELSTGKDTPS GHWELAGVPV LYEWGYFSDH
TNSFPKELTD KILARAGLSD YLGNCHASGT AILEELGNEH MTSGLPIFYT SADSVFQVAC
HEETFGLENL YTLCQIVREE LEPYNIGRVI ARPFVGTGPS DFARTGNRRD YAVEPPAKTV
LDKLKDSGGE VVSVGKIADI YAHCGITKKI KASGLEALFD ATLEELKVAG DNTIVFTNFV
DFDSHFGHRR DVAGYARSLE YFDSRLPELM ALMGEDDLLL LTADHGCDPT WPGTDHTRER
VPVLAYGAGL EAGSLGRRKS FADMGQSIAS YFKLEPMEYG ESFIK
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