| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3375 |
|---|
| Symbol | deoD |
|---|
| ID | 5609953 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 4111366 |
|---|
| End bp | 4112076 |
|---|
| Gene Length | 711 bp |
|---|
| Protein Length | 236 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640934313 |
|---|
| Product | purine nucleoside phosphorylase |
|---|
| Protein accession | YP_001475107 |
|---|
| Protein GI | 157376507 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0813] Purine-nucleoside phosphorylase |
|---|
| TIGRFAM ID | [TIGR00107] purine-nucleoside phosphorylase, family 1 (deoD) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.284651 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTACAC CGCATATTAA CGCACCAGAA GGCGCATTCG CTGATACAGT GCTATTTCCA
GGCGATCCAC TACGTGCTAA GTACATTGCA GAGACTTTCC TGGAGAACGT TGAGCTAGTT
ACCGACGTTC GTAACATGTT CGGCTACACC GGTACTTATA AAGGGACTCG TATCTCTGTT
ATGGGTTCAG GCATGGGTAT TCCTTCATGT TCTATCTACG CGACAGAGTT GATTAAAGAC
TACGGCGTTA AGAACCTGAT CCGTGTCGGT ACTTGTGGTG CGGTTAGCAC TGACGTTAAA
GTTCGTGACG TTCTAATCGG AATGGGTGCT TGTACCGATT CTCAAGTGAA CCGTCTGCGT
TTTAAAGGTC AAGATTTCGC TGCTATCGCC GACTACAGCC TACTAAGTGC CGTAGTTAAA
GCTGCTGAAG CTAAAGGTAC TAAATTCCGC GTTGGTAACG TATTCTCTGC CGATCTTTTC
TACACTCCAG ACCCAGAAAT GTTCGACGTT ATGGAAAAGA TGGACATCTT AGGTGTCGAA
ATGGAAGCTG CCGGTCTTTA CGGTGTTGCT GCTGAGTTCG GTGCTAAAGC ATTGTGTGTT
TGTACTGTAT CTGATCATAT CCGTACCGGT GAAAAGACCT CTTCTGATGA GCGTCAAACT
ACCTTCAACG AAATGATCGA AATGACACTG GAAGCTGCAA TTACACTTTA A
|
|---|
| Protein sequence | MATPHINAPE GAFADTVLFP GDPLRAKYIA ETFLENVELV TDVRNMFGYT GTYKGTRISV
MGSGMGIPSC SIYATELIKD YGVKNLIRVG TCGAVSTDVK VRDVLIGMGA CTDSQVNRLR
FKGQDFAAIA DYSLLSAVVK AAEAKGTKFR VGNVFSADLF YTPDPEMFDV MEKMDILGVE
MEAAGLYGVA AEFGAKALCV CTVSDHIRTG EKTSSDERQT TFNEMIEMTL EAAITL
|
|---|
| |