| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3372 |
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| Symbol | |
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| ID | 5609592 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4108196 |
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| End bp | 4109140 |
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| Gene Length | 945 bp |
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| Protein Length | 314 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640934310 |
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| Product | alpha/beta hydrolase fold |
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| Protein accession | YP_001475104 |
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| Protein GI | 157376504 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG2267] Lysophospholipase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.670411 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCCATAA AACAAGACTC GCATTTTATC CCATACCTCG GCGGTAGACT CCATTTGAGG
CAGATTCGTT CGAGTGATAG CGACATCAAA GAGATGTCAA AACCACCGAT CCTGATGCTT
CATGGTGCCA TGTCCAATGG ACGTGTCTTC TACAGTGAAA CCGGAAGGGG GCTGGCGTGC
TTTTTAGCCG AGGCAGGATT TGTTGTCTAT GCGCTCGATA CACAGGGACG CGGCCTGAGT
ACGCCAAAAT TGCAACGCGG CTTTACTGGC GGCCAGGGGG AGGTTATTCG TGACCAGCTT
CCCTTGATCC ATCACTATAT TCTCGGGTTA CACCCTAAAG TATCTAAGGT TCATTGGTGC
GGCCATTCGT GGGGCGGCGT GCTTATGGCC AGCGCGATTA GCCGATTCCC CCTGTTTCAG
GACAGTGTGG CCTCACTTCT TACTTTTGGC AGCAAGCGCA GGATTAAAAT CAGATCGCTG
AAGAAGTGGA TGATGGTCGA TCTGGGGTGG AACAAGTTGG CCCAAGCTAT AGCATGGAGT
CATGGCTATC TGGCTGCCGA CAAGTGGCGA ATGGGAATGG ATAATGAGAG TCGTCAGTCA
CTCGCTCAAA GCATCGATTG GGTGAGGGGA GATTGGATAG ACCACGATGA CGGTTTCGAT
TACGCAAGGG CCGCCAGAGA TGTTGCCGAG CAGGGAAAGT GGCCCAAGTC CTGGTTTATT
GCGGGCTCAG GGGATCATGT CTTAGGAAAC CCCGCCGATG TGCGACGCAT GGTTGAGGAG
TGTCAGCTTA AGGATGTGAA CTATACCCTG TTATCTAAAT CCAAGGGGTT TAAACACGAT
TATGGCCATG CCGATATGTT GACCCATAAA GATGCGGTGG ACGATCACTT CATTCAGGTC
AGACAATGGT ATCTGAACTG TAAGCCCGAG CGAAGACACT GTTGA
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| Protein sequence | MAIKQDSHFI PYLGGRLHLR QIRSSDSDIK EMSKPPILML HGAMSNGRVF YSETGRGLAC
FLAEAGFVVY ALDTQGRGLS TPKLQRGFTG GQGEVIRDQL PLIHHYILGL HPKVSKVHWC
GHSWGGVLMA SAISRFPLFQ DSVASLLTFG SKRRIKIRSL KKWMMVDLGW NKLAQAIAWS
HGYLAADKWR MGMDNESRQS LAQSIDWVRG DWIDHDDGFD YARAARDVAE QGKWPKSWFI
AGSGDHVLGN PADVRRMVEE CQLKDVNYTL LSKSKGFKHD YGHADMLTHK DAVDDHFIQV
RQWYLNCKPE RRHC
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