| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3369 |
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| Symbol | |
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| ID | 5609733 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4101084 |
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| End bp | 4103252 |
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| Gene Length | 2169 bp |
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| Protein Length | 722 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 640934307 |
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| Product | hypothetical protein |
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| Protein accession | YP_001475101 |
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| Protein GI | 157376501 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTTAT TAAAACTATC TCTTATTGGA TTCATGCTTT TATGGAATCA AGCCCATGCA
CAAAATTCAG TAATCAGTGG TGGAAATTTT ACCGAAAACA TTAACATCGT TGACGGAAAA
TTTGAGCATC AATTTGTTAT TCCACAATCA GCATCTTTAG TAGTTAATGT AATGCTTCCT
GAATCGACTG AAGTACAGAA TATCAGCGTT ACCTTGGCTG ATGGGACGGT TGTGACCACT
GAAAATGCGG ACGAGCACAA TGTCTCAATT AAAAGCTTCA TACCAGTAGG TGCCGAAAGT
ATTTGGGTCT TTCCAGTTAG AACGGTATTT ATTAAATTAG CAGGTGTCCC AGTTGGTGCC
ACTACTATTG CCGGGGATGT GACAGTAAAC AACTCCAAAA GCATGATACC AATAGCATTT
TCGTACAAGG GAGGGGGGCT TTCTTTCGAA AATGATGTGA GCCCTATCAT TGCAGTAAAT
ACTTCTACTA CCGTTTCATT GACACAAACG ATATTAGAAG ATGGTTTACA GACACTTAAT
CCAGCAAATG CTGTTTTAAC TATTCACCAC AAGGATTTAC CATCTGTAAC TAAGCAGATG
TTCGACGATG GGGCATTAGG TGATCTGCTG GCAAATGATG GCATTTATTA CACCGGTTAT
ATATTTCCTC AAACTGGGAG GTATAGCTTA TTTTTCGAAT CAACAGTTGT AGATATTAAT
GGCGTTACTC ACAAAGACAG TTCATATTCG TCTATAAGAG TAAATTCTGT ATCGCCATTT
CAATTAGCAG GTAACTTTAC CGATCAAGGA GTTGATACAG ATGGTGATGG GTATTTCGAT
CAGTTAAAAA TAGTTATAGA GCTGGAGGGA AGTATTCCGT TAGATAAGCA GTATTCTCTT
GCTGTACAGA TAGGTTCATC TGAGAAATCC TATAACACTA GCTACTCAAA AATCGATCCT
CTAAGTTCAG AGCATAGCGT ATATTTCGAT GGGTTGAAGT TAAGGAAGTG GCATAATTCA
GGCCCTATCA ATCTAGAAAT TGTAAAAGTA TTTGATGATA CAAACCATAA GCTTGTGAGT
TACCATGAAA ATCTCGGGTC TACAAAACAG TATGACCAGA ATGATTTTGC CCGAAAGAAA
GAAATTATCG ACCAAAAATC CGCTACATTT TCATTTGTTG ACGAAGACGG AAATAATATT
TATGAAGGGA TAAAAGCTTC ATTTATTGTT GATGTGCTTG AAGATGGCGT ATACGAGGCT
AGAGCGCGAC TCAAGGAAGC TGCCATTCAC AACGTATGGG ATTCAAAGCA CTTTCAAAGT
AAAGCGAGGC AGACACTTAC GGCAGGAATC CATACTTTTG ATATTATCTA TCCTGCCAAA
GATATAATCG AAACGAATCT CACAGGCCCT GGAGAACTCG CTTTATTCAC ATTCTATAGG
TATGACGATA AGGTTTTTAG AAGTGTAGAT AAAAATCTTT TTGGTATAAC TCCCCCATTC
GTATGTTGGG ATTTTGGGGA CTGCTCAGCA TCAGGACATA ATACGAGCCC AATAGCTTCA
GATGATATTT ATTTTTATAT CGAAGGTTTC TTGGATAACT CTGGAGAACC TAGAGTTGTA
TTAGACTTGT TATCCAACGA CGCTGACCCT GACGGGGATG ATATTAAGTT GGTCAATTCC
AATTTAATTG AACCCACTAA TGGTACAGTC AGTTATTGTA ACTCAGGTGG TAAGCATTGC
TATATCCCTA ATCCGGGCTT TTCAGGAGTC GATACTTTTA CTTATAATAT AATTGATTTT
TATAGCAAAA ATGGTATCGC AAAAAGCGGT TCTGATACCG GAACAGTTAC AATTAATGTT
AGAGCAAACA ACATGGCTAC TCCAGCCAAC GATTACGCAG ATGGAACATC TGGCCAACTC
ATAACAATTG ATGTTTTAGC GAACGATACT GACCCTGATG GAGATAACCT ATTTATTGTT
TCTGTAGACC AACCCTTAAA TGGCTCTGCC AATGTAGTTA ATAATAAGGT TGTATATACT
CCCGCTGCCG AGTTTGTTGG TACTGAGCTA TTTAACTATG ATTTTAAGGA ACAAGATCTT
GCTTCAGGAA TGACTGGTGG CTATATCTAT TCAGGAACTA TCGAAGTAAC GGCTAAGCCC
CAAAATTAA
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| Protein sequence | MNLLKLSLIG FMLLWNQAHA QNSVISGGNF TENINIVDGK FEHQFVIPQS ASLVVNVMLP
ESTEVQNISV TLADGTVVTT ENADEHNVSI KSFIPVGAES IWVFPVRTVF IKLAGVPVGA
TTIAGDVTVN NSKSMIPIAF SYKGGGLSFE NDVSPIIAVN TSTTVSLTQT ILEDGLQTLN
PANAVLTIHH KDLPSVTKQM FDDGALGDLL ANDGIYYTGY IFPQTGRYSL FFESTVVDIN
GVTHKDSSYS SIRVNSVSPF QLAGNFTDQG VDTDGDGYFD QLKIVIELEG SIPLDKQYSL
AVQIGSSEKS YNTSYSKIDP LSSEHSVYFD GLKLRKWHNS GPINLEIVKV FDDTNHKLVS
YHENLGSTKQ YDQNDFARKK EIIDQKSATF SFVDEDGNNI YEGIKASFIV DVLEDGVYEA
RARLKEAAIH NVWDSKHFQS KARQTLTAGI HTFDIIYPAK DIIETNLTGP GELALFTFYR
YDDKVFRSVD KNLFGITPPF VCWDFGDCSA SGHNTSPIAS DDIYFYIEGF LDNSGEPRVV
LDLLSNDADP DGDDIKLVNS NLIEPTNGTV SYCNSGGKHC YIPNPGFSGV DTFTYNIIDF
YSKNGIAKSG SDTGTVTINV RANNMATPAN DYADGTSGQL ITIDVLANDT DPDGDNLFIV
SVDQPLNGSA NVVNNKVVYT PAAEFVGTEL FNYDFKEQDL ASGMTGGYIY SGTIEVTAKP
QN
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