| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3366 |
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| Symbol | |
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| ID | 5610082 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4097982 |
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| End bp | 4099109 |
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| Gene Length | 1128 bp |
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| Protein Length | 375 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640934304 |
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| Product | TMAO reductase system periplasmic protein TorT |
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| Protein accession | YP_001475098 |
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| Protein GI | 157376498 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02955] TMAO reductase system periplasmic protein TorT |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTGTGA AACAGTGCCT ACAGAGCAAA ATAAACTTAT TTATAATCTG TTTATTGCCG
CTTTTTTTTA CGATGAACGT ACATAGCACG CCGTCCTCAT TAAACTGGTC ATTAGAGCAA
CGCACTCCCT ATAATGCCAA AATTCAACAC GCTTCAGCTC TGGATTATCA TCCTCTTAAA
AATACCATAA AACCATGGAA AATATGCGCC TTAGTGCCTC ATCTTAAAGA TGCCTATTGG
ATTGGCATCG ATTACGGCTT AGTTCAACAT GCTAAAGCCC TCAATATTAA ACTCGAGCTA
TTTGAGGCTG GGAGTTATTA TGGAAAAAAG AAGCAGTTAA GCCAACTCTC TCACTGCATG
AACCATGACT ACGACGCTAT TTTACTCGGC AGTGTCGACC CTAAGCTTTT ATCCTATTAC
TACGACCCTA TCACTAAGCC TGTCATCGCG CTGGTTAACC GCATCGACAG CCCGAAAATT
AAGACCCGAG TCGGCGTCAG CTGGTATCAG ATGGGCTGGC ATGCCGGTCA CTTCATTAAA
GATCAGGTAG AAAAGAGCCG TCTTGAGAAT CATGACAAGC CCCATCACAA GAGTATTAGT
AAGGAGCAAG CCAATACCAC CCTTGCCCTG TTGACCGGGC CGGAGAAACA GGGGGGCAGT
GATTGGGTCG AACAGGGGAT AATGGCCGCT CTCGAAAACA GTAAAGTGAC AATCTCATCC
ATTCGTCACG CCGATAACAA CCGTAATCTC TACCGGGATC AACTGCATCA CCTACTCAAC
GACCAAACCC CAGACTATAT CTTAGGCAGC GCCGTAGCCA TTGAAGCCGC AATCGGGGAG
ATCCAACATA AGAAGGTTGA GGAGCGGGTC AAACTGGTCA GCAGCTACCT CTCTCCCGCC
GTTCTGCGCG GTTTATTCAG GAATAAAGTC GCCTTCAGTA GCGATGACTT GGTGGTTCTG
CAGGGAAAGC TGGCCATAGA TATTATGGTG AGAGTACTGG AAGGCGCGGG GGAGTTTGGT
GATATCGGCC CCGCCATTCA GATGCTACAA AAAGATGTGT TGAGCGATAA CATATTGAGC
GACAGTCTGG CTCCCGCCGA ATTTTATCCC ATTTACAGAG TTAACTGA
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| Protein sequence | MIVKQCLQSK INLFIICLLP LFFTMNVHST PSSLNWSLEQ RTPYNAKIQH ASALDYHPLK
NTIKPWKICA LVPHLKDAYW IGIDYGLVQH AKALNIKLEL FEAGSYYGKK KQLSQLSHCM
NHDYDAILLG SVDPKLLSYY YDPITKPVIA LVNRIDSPKI KTRVGVSWYQ MGWHAGHFIK
DQVEKSRLEN HDKPHHKSIS KEQANTTLAL LTGPEKQGGS DWVEQGIMAA LENSKVTISS
IRHADNNRNL YRDQLHHLLN DQTPDYILGS AVAIEAAIGE IQHKKVEERV KLVSSYLSPA
VLRGLFRNKV AFSSDDLVVL QGKLAIDIMV RVLEGAGEFG DIGPAIQMLQ KDVLSDNILS
DSLAPAEFYP IYRVN
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