| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3365 |
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| Symbol | |
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| ID | 5610081 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4094802 |
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| End bp | 4097831 |
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| Gene Length | 3030 bp |
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| Protein Length | 1009 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640934303 |
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| Product | multi-sensor hybrid histidine kinase |
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| Protein accession | YP_001475097 |
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| Protein GI | 157376497 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2205] Osmosensitive K+ channel histidine kinase |
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| TIGRFAM ID | [TIGR02956] TMAO reductase sytem sensor TorS |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGTAATT TATCACTATC CAGAAAAAGC CTGGTCGGCC GCCTAATGTT GGCTTTTTGC
CTGCTGGGTT TCCTGTTATT GCTCTTAGTC TCTCTGGGCA GCCTGAGCCT CTACTGGGTT
AAGTTAGCCG ATAAATACCT CTATGATGAA GCGCTTCCGG CTTCTCAAGC CGCACGTTCA
CTGGTTCAAT CTTCAAATGC ATTGGCCGAA AATGCCACCG CTTTGGGTAG GGTAGAGGAA
GAGCCACAAC GACAGTTTAT CGGGAGAACC CTGTCGATAA ACAGTGCCAA CATGCTGGGG
GCGATTGCGA GCCTTAAGGT GCTGGAGGTA CAGAGTGCTC GTCGTTTAGA GTTATCTGCC
GGCGAGATTA TTCATGATAT GTCCCAGTTA GGCCTGCAAG TGGGAAAACG CCTGGCCGTT
GCCGGGCAGC TCTCGACTCA GGGAGAGGCG TTAGCCAGGG CGGCAAGCCA TAGCACTGCT
TTACTTGAGG CCGAGTTGGC CGTGGTCGAT TCTGCCATCC TGGCTAAATT GAGTTTGGCG
TATCCCGAGG TTGCCGGAAA TTCTAAGAGT GCTTATCTGC TCGATACCGT TATCGAACAA
GACTTAGATA TTCAGGAGCG ACTCAATCGA GCCCTGAAAC TGATCCATAA TATTGCCTTG
GTAGGTCAGC TACTTCAGTC TCCTGAGCAG GAGACCGGGC TGTTAAAAGT ACTCAGCGGT
ATGTCGCAAA TGCCGGCAAT GAGCAGCTCA TACCAGATCC AGCCTTTAGC TCCGTCATCG
ACTTCTCCAA CGTCATCTCC AATGTTCAAT ATCGGTCCCA AAGTTGACTT GATGGCTCTG
GAACTGCTCA AGGGCTTAAT CAGGGACCCC GCCCGGGCAC TGGAGCTCGA TAAGGAACTG
GTTATATTGC GTCAGGTGTC TCAGGGACTG GCTGCACAAA AACAATACTC TCAGCTGCTA
AAGGAGCAGG ACAAGCAACT ACAGGCGCTG TCCGATAAGT TGTATGGACT CAACGAGGCC
GTCGACAATG CGATGGCGAC ACAACAGCAA CAAGCTGAAC TTGCCCGAAT CGATTATCTG
CAGCAGCTGT CCTGGGCTAA GGCGGGTCTG TGGAGCACCG GAGTTCTTAT GTTCCTGGTG
ATATTATTAG TCATCTACAA GGTGATATAC AAAGGGATCG CACTGAGGTT AAACGAAGCC
ACCGAAGCCT TGTCCCGACT GAGTCTGGGG GATACCCAGG TGACGATTAA TTCACATGGT
GATGATGAGC TGACGGCGAT GGCTAATGCG TTGAAGGCAT TCAAACAGAA GACGGCCCAT
AACCAGAAGT TACAGGCTGA GTTGAGGGAC AGTGCCGCCG AACTGACAGA ACATAAAGCG
GCGCTGGAGA TCACCGTCGA GGCTCGAACC CAGGAGCTGG CAATAGCAAA CAGACAGTTG
GATGCGGAGG CCAAGGGTCA TGCTCAGGCC CGAACGATGG CAGAGCAGGC CAACCAAGCT
AAGTCGCTGT TTCTTGCCAC CATGAGTCAT GAAATTCGAA CGCCGCTCAA TGGATTATTG
GGTACCCTGA CTTTGTTGAG CCATTCGGAT CTACCGGTGG CTCAAAAGCA GATGTTAGCC
CTGTCGCAAT ATAGCGGCAC ACTATTGCAA ACGGTGTTAA ACGATATCTT AGATTTCTCC
CGCCTCGAAC AAGGGAAGCT GACTAATGAA TGCCGCCCGG TTGCCATCAA TGATCTGCTC
GATGAGGTCG TGGCGATCAT GTTGGCCGGC GCCGGGTTAG CAGGGTTAAA GCTGGTACTG
GATAGCCCCC AACTGCCACA GTGTATCAGT ATCGATGGCC CTAAGCTGAG ACAGGTTCTG
TTTAACTTGT TGGGTAACGC CATCAAGTTT ACCCCTGAGG GAGAGGTGCG TCTGAAAGTT
TATATCGAGG GAGAACGGCT CTATTTCGAG GTGATAGATA CCGGGGTAGG GATCAGTCTT
GATGCCAAAA CCCAACTGTT TAAGGCATAT AGTTCGCAAC CGAATCTTGG GCGCTCAAGA
GGAACCGGCT TAGGGCTGGC CATCAGTAAA GAGCTGGTGG AATTGATGTG TGAGAATTGC
GAAGGAGACA CGGACAGCGA CTGTGGTGAA ACAACTGAAG TCGTTGACCG GCTCTGGGTG
GAAAGTGAGG TTAATAAGGG CAGCCGCTTT GGCTTTAGTT TACCTTTGCA TGTTTGTAAG
CAAGCCATCA GTACCTGCGA CCAGGCGTTG AATGAAGTAA GTAAGAAGCA GGTATTAGTG
ATTGAAGATA ATAAAGTGAA TGCCATGGTG GCGCAGGGGT TCCTGGCGCA CTTAGGTCAC
GAGTCCACCC TTGCCAATAG CTGCGCTGAA GCGCGCGAGT TATACCGCCC GGATACGGCT
AAAGGCTTTG ATGCCATCAT GCTGGATATT CAATTGGGGG ACGGATCCGG GATCGAGCTG
CTCGAAGAGT TGCAGAACAT CAACAAACAG GCATCTCACC GATTAGAGAT TGCCGCATTC
ACCGCCCAGA TCCAGGCCGA TGATATTGTC AGTTATCAGA GGGCCGGTTT CGATATCGTA
TTGGGTAAGC CGCTGAATAT GCAATCGTTA GCGGCTTGGA TTGGTGTCGC TCAAATCCAA
TCACCGAAGG AGGCATCTGT ACCGCCTCTG GGCAGTACCG TAGAAGAGCA GAGTAATGGA
AGCACTGATG TCGATAAGGC TGAGTCACTG ATCGATTTGA ACCAGATACA GCAGGATATC
GATTACCTCG GACTCGATGC GGTCACTGAG ATGCTCGAGC TGTATAGAGA GTCCAGCCAG
ATTCAAATAC AGGCCTTAGG TGAATACCCC AAGCATACGG GAACACTCCT GCACGCGCTT
AAGGGGAGCA GTGCGAGTAT GGGCCTTATT GCCATGGCTG AACGGTGTAA GGCGTTGGAG
GGGGAGGCTT ATCAAGTCAG TGAACACCAA CAATTATCGC AGCTATACCG AGAGTCGATC
GATAAGCTGG AGAGGATACT TACGCCATAA
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| Protein sequence | MSNLSLSRKS LVGRLMLAFC LLGFLLLLLV SLGSLSLYWV KLADKYLYDE ALPASQAARS
LVQSSNALAE NATALGRVEE EPQRQFIGRT LSINSANMLG AIASLKVLEV QSARRLELSA
GEIIHDMSQL GLQVGKRLAV AGQLSTQGEA LARAASHSTA LLEAELAVVD SAILAKLSLA
YPEVAGNSKS AYLLDTVIEQ DLDIQERLNR ALKLIHNIAL VGQLLQSPEQ ETGLLKVLSG
MSQMPAMSSS YQIQPLAPSS TSPTSSPMFN IGPKVDLMAL ELLKGLIRDP ARALELDKEL
VILRQVSQGL AAQKQYSQLL KEQDKQLQAL SDKLYGLNEA VDNAMATQQQ QAELARIDYL
QQLSWAKAGL WSTGVLMFLV ILLVIYKVIY KGIALRLNEA TEALSRLSLG DTQVTINSHG
DDELTAMANA LKAFKQKTAH NQKLQAELRD SAAELTEHKA ALEITVEART QELAIANRQL
DAEAKGHAQA RTMAEQANQA KSLFLATMSH EIRTPLNGLL GTLTLLSHSD LPVAQKQMLA
LSQYSGTLLQ TVLNDILDFS RLEQGKLTNE CRPVAINDLL DEVVAIMLAG AGLAGLKLVL
DSPQLPQCIS IDGPKLRQVL FNLLGNAIKF TPEGEVRLKV YIEGERLYFE VIDTGVGISL
DAKTQLFKAY SSQPNLGRSR GTGLGLAISK ELVELMCENC EGDTDSDCGE TTEVVDRLWV
ESEVNKGSRF GFSLPLHVCK QAISTCDQAL NEVSKKQVLV IEDNKVNAMV AQGFLAHLGH
ESTLANSCAE ARELYRPDTA KGFDAIMLDI QLGDGSGIEL LEELQNINKQ ASHRLEIAAF
TAQIQADDIV SYQRAGFDIV LGKPLNMQSL AAWIGVAQIQ SPKEASVPPL GSTVEEQSNG
STDVDKAESL IDLNQIQQDI DYLGLDAVTE MLELYRESSQ IQIQALGEYP KHTGTLLHAL
KGSSASMGLI AMAERCKALE GEAYQVSEHQ QLSQLYRESI DKLERILTP
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