| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3364 |
|---|
| Symbol | |
|---|
| ID | 5610080 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 4093411 |
|---|
| End bp | 4094670 |
|---|
| Gene Length | 1260 bp |
|---|
| Protein Length | 419 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640934302 |
|---|
| Product | DEAD/DEAH box helicase domain-containing protein |
|---|
| Protein accession | YP_001475096 |
|---|
| Protein GI | 157376496 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTTTT CATCTATGGC TTTGAGTCAA AAACTTATAA CCCTGCTGTC TGAGTTAGGT
TATTCATCAC CTACGCCGAT ACAGGCTCAT GCCATTCCGG TTATTTTAGC CGGACAGGAT
ATTATGGCCG GCGCACAAAC GGGAACCGGG AAAACCGCCG CATTTGCCTT GCCCATTTTG
CAAAAACTTA GCGAGTGTGA TGTTGAACTG TCGGATACGA AGCAAACCGT GAGTCTAAAA
CCTGTGCGGG CCTTGGTGCT GACACCGACC AGAGAGTTGG CGCTACAGGT TAATCAAAGT
TTCGCTAAGT ACGGCAAGGA CTCGGGGTTA AATACCGCGA TTGTCTACGG CGGTGTGAGT
ATCGATGCTC AAGCCGATGC CTTAAAAGCG GGTGTCGATA TTCTGGTTGC GACGCCGGGT
CGCCTTTTGG ATCATCTCAG GCGCGGCTCG CTGACGTTGA AACAGCTGAA TTTCTTAGTC
TTCGATGAAG CCGACCGCAT GTTAGATATG GGCTTTAAGG ATGAGATTAA CGCCATTTTA
AAACAGGTAC CCTCGAAGAG GCAGACTCTG CTGTTTTCCG CCACATTCGA TCCCAGTGTA
TTTGCCCTGA GTAAACGTCT GCAGCAAGAC CCTAAGCTGA TTGAGGTGGA TAAACGTAAT
ACGCTAGCCG CTAAAGTGGA GCAGGTCGTT TATGCCGTCG ATGCCGACAG GAAGAGTGAG
CTTATCTGTC ATCTGGTCAA GTCAAAGCTG TGGCAGCAAG TGCTGATATT CAGCCGTAAA
AAGCAGGGCG CCGATAATAT CGCCGCTAAG ATGGTTAAGG CCGGCATTAA GGCGCAGGCG
TTTCATGGTG ACCTGTCACA GGCGGTAAGG GAAAAAGCAT TGCAGCAGTT TAAGCAAGGC
GAGATTCAGG TCTTGGTCGC GACCGATGTT GCGGCGCGGG GACTCGATGT CGAGGAACTG
AAGGTGGTGG TGAATTATGA ACTGCCCTTT ATTGCCGAAG ATTATATTCA CCGGATTGGT
CGCACCGGCC GTGCGGGAAA TGCTGGGCTT GCTATCACCT TGTACAGTGA AGAAGATGCA
CTCCTTCTCG AAGAGATCGA GGCGTTACTG GACTCGCGGC TGCCCCAGCA ATGGCTGCCG
GGGTTTGAAC CTGATTTAAC CAAAGCCGAG CCAGTTACCC GAAAGAACAG TAAAGCGGCG
CAGAAACAGA GAGCTAAGCG AAGAGCCTCA GGTGGCAAGA AGCCGGGTTC GAGGCGTTAA
|
|---|
| Protein sequence | MSFSSMALSQ KLITLLSELG YSSPTPIQAH AIPVILAGQD IMAGAQTGTG KTAAFALPIL
QKLSECDVEL SDTKQTVSLK PVRALVLTPT RELALQVNQS FAKYGKDSGL NTAIVYGGVS
IDAQADALKA GVDILVATPG RLLDHLRRGS LTLKQLNFLV FDEADRMLDM GFKDEINAIL
KQVPSKRQTL LFSATFDPSV FALSKRLQQD PKLIEVDKRN TLAAKVEQVV YAVDADRKSE
LICHLVKSKL WQQVLIFSRK KQGADNIAAK MVKAGIKAQA FHGDLSQAVR EKALQQFKQG
EIQVLVATDV AARGLDVEEL KVVVNYELPF IAEDYIHRIG RTGRAGNAGL AITLYSEEDA
LLLEEIEALL DSRLPQQWLP GFEPDLTKAE PVTRKNSKAA QKQRAKRRAS GGKKPGSRR
|
|---|
| |