| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3360 |
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| Symbol | |
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| ID | 5609735 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4087725 |
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| End bp | 4090217 |
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| Gene Length | 2493 bp |
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| Protein Length | 830 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640934298 |
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| Product | trimethylamine-N-oxide reductase TorA |
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| Protein accession | YP_001475092 |
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| Protein GI | 157376492 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
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| TIGRFAM ID | [TIGR00509] molybdopterin guanine dinucleotide-containing S/N-oxide reductases
[TIGR02164] trimethylamine-N-oxide reductase TorA |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAGAA GAGACTTTCT AAAAGGCTTA GTATCAACAT CTTATGTTGT CCTAAGCGGA
GCCTCGGTAC TCGCTCCACT CAATGCCTTA GCCGCGTCTG GCGCCAAGTC AAAAGATGGC
TGGTTAACAA CGGGGTCGCA CTTCGGTGCG TTCAAGATGA AGCGTAAGAA TGGCGTCATT
GACCAGGTAA AACCCTTCGA CCTTGATAAA TATCCAACGG ATATGATCAA TGGTATTAAG
GGGCTGGTCT ATAATCCATC TCGCGTTCGC TACCCTATGG TGCGTTTAGA CTTCCTGCTT
AAGGGACATA AGAGTGACAC CACACAACGC GGTGATTTTC GCTTCGTTCG GGTAACCTGG
GATAAGGCCC TCAACCTGCT TAAAGACTCA CTCGATGAGG TGCAGTCTAA ATATGGTCCA
TCTGGGCTAC ATGCAGGTCA AACCGGCTGG CGCGCCACGG GTCAGCTACA CTCCAGCACC
AGCCATATGC AACGTGCCAT AGGCATGCAC GGTAACTTCG TCAAGAAGGT GGGTGATTAC
TCAACGGGTG CAGGGCAAAC CATTCTGCCT TACATCTTAG GCTCCACCGA GGTCTATGCG
CAGGGTACTT CCTGGCCACT GATCCTCGAA GAATCGAACA CCATTATTTT ATGGTCAAAC
GATCCCTATA AGAACCTTCA GGTGGGCTGG AACGCCGAGA CTCACGAGTC ATTTGCCTAT
CTTGCTCAAC TGAAAGAGAA GGTAAAGCAG GGCAAGATCC GCGTGATAAG CATAGATCCC
GTGGTCACCA AGACACAGAA GTATCTGGGC TGTGAACAGC TCTACGTCAA TCCACAAACC
GACGTTGCTT TGATGCTGGG TATTGCCCAT GAGATGGTGA GCAAAAAGCT GCACGATCAG
AAGTTCATCG AAGGCTATAG CCTAGGCTTC GACCGATTCC TGCCTTACCT CATGGGTGAG
AGCGACGGCG TCGCTAAGAC GCCTGAATGG GCAAGCGAGA TCACCGGCGT TTCGGCAGAG
ATCATCCGTG ATTTAGCCAA AGTGATGACC AAAGGTCGCA CTCAGATGAT GATGGGCTGG
TGTATTCAAC GTCAACAACA TGGCGAGCAG CCCTATTGGA TGGCTGCCGT ACTGGCTACC
ATGATAGGCC AGATTGGCCT GCCCGGTGGC GGCATCAGTT ATGGTCACCA CTACTCAAGC
ATTGGCGTAC CCTCTTCAGG TGCCGCGGCG CCGGGGGCCT TCCCGCGTAA CTTAGACGAA
GATCAGAAGC CACTGTTCGA TAGCAATGAC TTTAAAGGCG CAAGCAGTAC CATTCCTGTC
GCCCGCTGGA TCGACGCCAT CATGGAGCCG GGAAAGACTA TCGATGCCAA TGGCTCGAAA
GTCACCTACC CTGACATCAA GATGATGGTG TTCTCGGGTA ACAACCCCTG GAACCATCAC
CAGGACAGAA ACAAGATGAA GCAAGCTTTC CAGAAGCTTG AATGCGTCGT CACCATAGAC
ATGAACTGGA CCGCGACCTG TCGTTTCTCC GATATCGTAC TGCCAGCCTG TACGACTTTC
GAGCGTAACG ATATCGACGT CTATGGCAGC TACGCAAACC GCGGTATTCT CGCCATGCAG
AAGATGGTCG AGCCGCTGTT TGAGAGTCTC TCCGACTTTG AAATATTTAC CCGTTTCGCC
GCCATCATGG GCAAAGAGAA AGCATACACT CGTGGCATGA CGGAGAAAGA TTGGCTCATT
AAACTCTACA ACGATTGTAA AGCGGCCAAT GCCGGTAAGT TTGATATGCC GGACTTCGAA
TCTTTCTGGA AAGAGGGTTA CGTCCACTTC GGTGAGGGTA AGCCATGGAC ACGTCATGCG
GACTTCAGGG ACGATCCTGA GATCAATCCT CTCGGTACCC CTTCGGGTCT GATTGAGATC
TTCAGCCGTA AGATCGCCCA GTATGGTTAC GATGACTGCC CGGGTCACCC GACCTGGATG
GAAAAACTCG AACGTAGCCA CGGCGGACCC GGCTCCGATA AGTTCCCTGT CTGGATGCAA
TCTTGCCATC CCGACAAGCG TTTGCACTCT CAGATGTGTG AGTCCAAAGA GTATCGCGAA
ACCTATAGCG TACAGGGCCG CGAGCCGGTG TACCTGAGCC CCGTCGACGC GAAAAAACGT
GGCATCAAAG ATGGCGATAT CGTTCGTGTA TTTAACGACC GTGGTCAACT ACTCGCCGGC
GCTGTTGTCA GTGACAGCTT CCCACAGGGT GTCATACGTA TCCACGAGGG TGCCTGGTAT
GGCCCTGTCG GCGAAGATGG CAGCAAAGAG GGCGGCGCAG AAATTGGTGC CCTATGCAGC
TATGGCGATC CAAATACCCT GACTCAGGAT ATCGGCACAT CAAAACTGGC TCAGGCCTGC
TCTGCCTATA CCTGTCTGGT TGAATTTGAG AAATATCAGG GTAAAGTACC CGAAGTAAGT
TCTTTCAATG GACCTGTTGA GACACAGATA TGA
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| Protein sequence | MNRRDFLKGL VSTSYVVLSG ASVLAPLNAL AASGAKSKDG WLTTGSHFGA FKMKRKNGVI
DQVKPFDLDK YPTDMINGIK GLVYNPSRVR YPMVRLDFLL KGHKSDTTQR GDFRFVRVTW
DKALNLLKDS LDEVQSKYGP SGLHAGQTGW RATGQLHSST SHMQRAIGMH GNFVKKVGDY
STGAGQTILP YILGSTEVYA QGTSWPLILE ESNTIILWSN DPYKNLQVGW NAETHESFAY
LAQLKEKVKQ GKIRVISIDP VVTKTQKYLG CEQLYVNPQT DVALMLGIAH EMVSKKLHDQ
KFIEGYSLGF DRFLPYLMGE SDGVAKTPEW ASEITGVSAE IIRDLAKVMT KGRTQMMMGW
CIQRQQHGEQ PYWMAAVLAT MIGQIGLPGG GISYGHHYSS IGVPSSGAAA PGAFPRNLDE
DQKPLFDSND FKGASSTIPV ARWIDAIMEP GKTIDANGSK VTYPDIKMMV FSGNNPWNHH
QDRNKMKQAF QKLECVVTID MNWTATCRFS DIVLPACTTF ERNDIDVYGS YANRGILAMQ
KMVEPLFESL SDFEIFTRFA AIMGKEKAYT RGMTEKDWLI KLYNDCKAAN AGKFDMPDFE
SFWKEGYVHF GEGKPWTRHA DFRDDPEINP LGTPSGLIEI FSRKIAQYGY DDCPGHPTWM
EKLERSHGGP GSDKFPVWMQ SCHPDKRLHS QMCESKEYRE TYSVQGREPV YLSPVDAKKR
GIKDGDIVRV FNDRGQLLAG AVVSDSFPQG VIRIHEGAWY GPVGEDGSKE GGAEIGALCS
YGDPNTLTQD IGTSKLAQAC SAYTCLVEFE KYQGKVPEVS SFNGPVETQI
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