| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3354 |
|---|
| Symbol | |
|---|
| ID | 5614227 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 4079501 |
|---|
| End bp | 4083229 |
|---|
| Gene Length | 3729 bp |
|---|
| Protein Length | 1242 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640934292 |
|---|
| Product | PAS/PAC sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001475086 |
|---|
| Protein GI | 157376486 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3292] Predicted periplasmic ligand-binding sensor domain
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAATTC ACATCTTCAT TTTGACATGG CTATTAGGGT GTATACCTCT CACCATGGCC
AAACAGCCAG ACTTCGACTT CTATGAAGCC GAAGATGGTC TGTCTATGAA TACGGTCAAC
GATATCGTTA CCGACAGTGA TGGATTTCTC TGGGCCGCAA CTCAGGCAGG CCTCAACCGT
TTTGACGGTA AAAACTTCAA GGTTTACGAC GTCACCAATG ACCAACATGG ACCAAGTGGA
AAGCACATCA CCCGACTGTT TTATGGGCAG AAAAAACAAC TCTGGTTACT CACAAAAAAC
GATGGAGTAA ACCAATATCA TCCAAGTCAC GACACCTTTA GCTTCTACCA CCATTTAAAC
AGTCCACTAC CCGATACTGA ATTTACCGAT CTCAGTCAGG ACAGCGATGG CAATATATGG
CTGGCAACAA AGGCCGATGG CCTTATTCAT TACTCACCCA CAGAGAATAA AATTATTCAT
CGATTCACCG ATGACTCTCA AGAAAACAGT CAAGCAAACA AGCTTATCAG TAACCGGATC
ACCCGACTCT TTACCGATAA ATTCGAGCGC CTGTGGATAG CATCGGACAG AGGCCTCTCC
CTGCTGACCC CGGAATTAAA CCTCACTCAC TTTCCTAACG ACAACACCTT AATTGAGGGG
CAAATCACCA GTGTAGAGAG CGGGCAGAGT AACACTCTCT GGATAGGAAC CAAGAGTAAG
GGGTTATATT TATTAGACAT TCACACAAAC AGCTTCAAGC ACATCGACAC AGCTATCGGA
CTCGAAGGCA ACCGAATAAC CAATTTAAAA AAAGACAGAC TTGGTAAGCT CTGGATAGGA
CTAGAGAAAA AAGGGGTAGC AAGATACTCC CCCCAGCACA AAACTATCGA GTTCTTCTCC
GGTGCGGCTA AAAATCGCCA TCAACTCAAT AGCCCTTTGG TCACCTCTCT GGCCATAGAC
AGTGCTCATC AACTTTGGAT TGGCACTAAG GGGGGCGGGC TCAATAAAAC CTTTCTAAAC
GCCGAAAGTT TTGGTCATAT GCACCCGCAG AGTTTTGCCG ATAACCGCCT TAGTAACGGC
AATGTCAGAA GCATATTCAG GGACCATCGA CAACAGCTTT GGATAGGCAC GGCCAAGGGG
CTATATCAGG CCCAGGAGGA TGAGAACAGA CAGATTATCG GCTTTAAACC TTTCGTGGTA
CCGGGTTCTA AACTATCTCA GAGTTTTATC AGTTTCATGA AGGAGGACAA ATTCGCTCGA
TTTTGGGTTG GCACACGAGG GGAAGGTTTG TTTATCTTCA CCCCGGATAA ACAGAGCTAC
ATTCACTACA AACACAATCT GGCCAACAGT AATGGCTTAC CCAGTGATCA TCTTTTTAGC
CTCTATTTTG ACAGCGATAA TAGTGCCTGG ATAACGACTA TGGATGCCGG CGTCGCAAAA
TATATCAGCG AGGCCAGAGG GTTTACCCAT TTCCAATATG ACAAAAATGA CGCGAACTCA
TTGGCAAGTA ACGAGGTAAC TAACTTAACC CAAGACAAAG AGGGAAACTA CTGGTTCACT
TCCTACGACG CAGGACTGAC CCGATTATCC ATCGATGGAG TCTTTACTCG CTTCAACACC
GACACTCAGG CAGACTTTCC CGATGATCAG TTGATGTCCG TCTTCATGGG TGAAAATAAC
ATCTTATGGA TAGGCTCCAG TAATGGCATC TTCTCTTTCA ATCCCCGCAC CCATGACACC
CAGCTCTTTA ATACTGACAA GGGGCTCATC GGAAACCTCG CTTACCTGAC TCTGATGGAT
AACAAACAAA ACCTCTGGGT AGGCACGGCA TCGGGCCTTA GTATGTTTGA TACCCATGAT
TTTAGCGTTA AAAACTACAC TAACATCGAT GGACTTCAGG ATAATGAATT TAATTTCGGA
GCAGGTTTTC TCGATGACGA CAACCGCATC TACCTCGGGG GAATTAATGG TTTTAACCAA
TTCAGGGCAA ATCAACTCCC TACTCTACAC CCACCCAGGG AACCAAGAAT TGATACCCTA
TCGATTCTAA ATAAAGACCA ATCGAGTGAT ATGCGACATA AAAACAGCTC AATACCTGAA
GAGAGCCAGC TTACATTATC CCATCACGAT GATATTTTCT CTCTCTATTA TCTTAGTCCT
GAGTTACATA GAGCCAATAG ATTAACCTAT GAATACAAAA TGATAGGTTT GCATGACAAA
TGGATCACGG GCCATCCGGA CCAAGTAGCC CGCTTCACGG GTATAGCATC GGGAGACTAC
ACTTTTCTCT TAAGAGCCAA AGATATTAAC GGCCAATACA GCCCGGTCAG ACGAGTGGAT
ATTCAAATAC TTCCCACGCC TTGGTTATCT TGGTGGGCCT ACTGTCTATA CATCACGGGA
TTCATCTCTC TGTTTTTTTT GTTGCTCTAC TCTAAGTCGA AAAAATACCG TCAACAGAGT
CGATTATTCA CAGAAATTGA GAAGAGTGAA CAGAGGCTTC AGCTGGCTCT ATGGGGAAGC
GGTGATGAAT TCTGGGATTG GGATATCGAT ACTCAGGAGG TGATACGGAG TAATACTTTC
CTGAAATACC CCGATAGGGA GACCAACCTG AATGACACCA TGAAACAATG TATTCATCCG
GACGATTACC GTGAAATTGC AGCAGAAATT GATCTCTGCA TGAATCAAGG CCAAGATAAA
TTTAAGTTGA TGTACCGTTC AATACTGGGG GATGGAACCT GGCTATGGGT CCTGAATAGA
GGCCAGGTGA TCACCAGAGA TCCGCTTGGA AAACCAACAC GAATAGCCGG TACGATCAAA
AACATTCAGG CTCAAAAAGA TAATGAAGCC ACATTAACAG CGCTCAATCG TGACTTAGAA
ACCAGAGTGC TCGAAAGAAC GAGTGAGCTG CAACATAAAA ACGATGAACT CAAAGAGACA
CTCGAAGAGC TAAAGCTGAC TCAAACTGAA CTCCTCGATA AAGAGAAGAT GGCCACCCTC
GGCGGACTGG TCGCCAGCAT CACACATGAA GTTAACACCC CTATAGGTAT CAGTGTCACC
GCTTCATCCC ATCTTCAGGA GAGCGTAAGG CTATTCAATA AACACTATGC CGATGGTGAG
GTATCCCATG AAGATTTTGA AGAGTATCAA ACTGAAGTTC ATGATTGCTC AAAGCTAATA
CTCACCAACC TGGAACGAGC ATCCAAACTA ATCAAGAGCT TTAAACAGGT CTCGGTCGAT
CAGTCCCATG AAGAGATCCG GGAATTTAAC CTTAAGACCT ATTTAGATGA GATATTTCTC
TCCCTCAACC CTATGCTTTC ACGTACTGTG CATGAGTATG AATACACCTG TCCGGATGAC
CTTTTCATTA AGAGTAATCC GGGGACCTTC TATCAAATTG TGAGCAATCT ATTCAATAAC
TCCGTCATTC ACGCATTCCC CGATGGACAC TCGGGTCACT TATCCCTCCA TATAACCAAG
ACAGGACATG GTATCGACTT AAGCTACCGA GATGATGGTT GCGGAATACC CATACAGGTT
CAAGATAAAA TATTCGATCC CTTCTTTACC ACCAAACGGG GTAAAGGCGG TAGCGGGTTA
GGCATGAATA TAGTCTATAA CTTAGTGACG CAGATGCTAG GTGGTGAAAT AACCTTGCAC
TCAGAAAAGG ATAAAGGCTG TCAATTCAAT ATATCCCTTC CTAAAAGCAT TTTAGTTAAT
ACAAAATAA
|
|---|
| Protein sequence | MRIHIFILTW LLGCIPLTMA KQPDFDFYEA EDGLSMNTVN DIVTDSDGFL WAATQAGLNR
FDGKNFKVYD VTNDQHGPSG KHITRLFYGQ KKQLWLLTKN DGVNQYHPSH DTFSFYHHLN
SPLPDTEFTD LSQDSDGNIW LATKADGLIH YSPTENKIIH RFTDDSQENS QANKLISNRI
TRLFTDKFER LWIASDRGLS LLTPELNLTH FPNDNTLIEG QITSVESGQS NTLWIGTKSK
GLYLLDIHTN SFKHIDTAIG LEGNRITNLK KDRLGKLWIG LEKKGVARYS PQHKTIEFFS
GAAKNRHQLN SPLVTSLAID SAHQLWIGTK GGGLNKTFLN AESFGHMHPQ SFADNRLSNG
NVRSIFRDHR QQLWIGTAKG LYQAQEDENR QIIGFKPFVV PGSKLSQSFI SFMKEDKFAR
FWVGTRGEGL FIFTPDKQSY IHYKHNLANS NGLPSDHLFS LYFDSDNSAW ITTMDAGVAK
YISEARGFTH FQYDKNDANS LASNEVTNLT QDKEGNYWFT SYDAGLTRLS IDGVFTRFNT
DTQADFPDDQ LMSVFMGENN ILWIGSSNGI FSFNPRTHDT QLFNTDKGLI GNLAYLTLMD
NKQNLWVGTA SGLSMFDTHD FSVKNYTNID GLQDNEFNFG AGFLDDDNRI YLGGINGFNQ
FRANQLPTLH PPREPRIDTL SILNKDQSSD MRHKNSSIPE ESQLTLSHHD DIFSLYYLSP
ELHRANRLTY EYKMIGLHDK WITGHPDQVA RFTGIASGDY TFLLRAKDIN GQYSPVRRVD
IQILPTPWLS WWAYCLYITG FISLFFLLLY SKSKKYRQQS RLFTEIEKSE QRLQLALWGS
GDEFWDWDID TQEVIRSNTF LKYPDRETNL NDTMKQCIHP DDYREIAAEI DLCMNQGQDK
FKLMYRSILG DGTWLWVLNR GQVITRDPLG KPTRIAGTIK NIQAQKDNEA TLTALNRDLE
TRVLERTSEL QHKNDELKET LEELKLTQTE LLDKEKMATL GGLVASITHE VNTPIGISVT
ASSHLQESVR LFNKHYADGE VSHEDFEEYQ TEVHDCSKLI LTNLERASKL IKSFKQVSVD
QSHEEIREFN LKTYLDEIFL SLNPMLSRTV HEYEYTCPDD LFIKSNPGTF YQIVSNLFNN
SVIHAFPDGH SGHLSLHITK TGHGIDLSYR DDGCGIPIQV QDKIFDPFFT TKRGKGGSGL
GMNIVYNLVT QMLGGEITLH SEKDKGCQFN ISLPKSILVN TK
|
|---|
| |