Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3351 |
Symbol | |
ID | 5610394 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 4075867 |
End bp | 4076727 |
Gene Length | 861 bp |
Protein Length | 286 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640934289 |
Product | peptidase U32 |
Protein accession | YP_001475083 |
Protein GI | 157376483 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0826] Collagenase and related proteases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGCAT CACTCGGCCC TCTGCTTTAT TGCTGGCCAA AAGAGAAGGT AATGGAGTTT TACAAATCCG TTGCCGATAG TTCGATCCCA TTAGTTTATT TGGGCGAAAC CATATGCAGT CGACGACGAG AACTCAAATT TTCTGACTAT ATGGAAATAG CGAATATGTT GAGAGAGTCG GGTAAAGAGG TCGTTATCTC TACATTGGCC CTACTCGAAG CCCCCTCTGA ATATAGCGAA TTGAAGAAAC AGGTCGCTAA TGGTGAGTTT ATCATCGAAG CCAATGATAT GGGGGCCGTT CAGGCTGCCA AGGAAAAAGG CCTGCCCTTT ATTTGCGGAC CAACGGTAAA TAACTATAAT CTGGCCAGCT TAAAAAAACT TCATGCTTGG GGCATGCAGC GATTCGTAAT GCCCGTTGAG TTATCAAAAA ACTGGCTAAA TACGGTACTT TCGGTCGAGA AACCAGGATT CGAGGTTGAA GTATTCGGAC ACGGGTATCT GCCTCTTGCA CTCTCTGCAC GTTGTTTTAC AGCCCGGCAT CAAGGGCTGG CAAAGGATAA ATGTCAAACC ATCTGTCTCT CAAACCCAAA GGGGCTGTTG GCCCAAACTC AGGAATCTCA ACCGCTACTG AGATTGAACG GTATACAGAC ACAATCGGCG GCCTGTATCG ATCTTTCACC TGAAATTGGT GAGATGGCAA AAATGGGAGT GGATTACTTC AGGGTATCGC CTTCCGGCAT GCAGTGTATT TCGCTTGCGG AGCAGCTTTT TGAAGCCGAT GTTTCGGGGC GTGTAGCGAA TACAGAAGAT CGCTGTAACG GCTACTGGTA TCAAGAGGCT GGCTTTAATA ATCTGAGTTA A
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Protein sequence | MKASLGPLLY CWPKEKVMEF YKSVADSSIP LVYLGETICS RRRELKFSDY MEIANMLRES GKEVVISTLA LLEAPSEYSE LKKQVANGEF IIEANDMGAV QAAKEKGLPF ICGPTVNNYN LASLKKLHAW GMQRFVMPVE LSKNWLNTVL SVEKPGFEVE VFGHGYLPLA LSARCFTARH QGLAKDKCQT ICLSNPKGLL AQTQESQPLL RLNGIQTQSA ACIDLSPEIG EMAKMGVDYF RVSPSGMQCI SLAEQLFEAD VSGRVANTED RCNGYWYQEA GFNNLS
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