Gene Ssed_3351 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3351 
Symbol 
ID5610394 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp4075867 
End bp4076727 
Gene Length861 bp 
Protein Length286 aa 
Translation table11 
GC content46% 
IMG OID640934289 
Productpeptidase U32 
Protein accessionYP_001475083 
Protein GI157376483 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0826] Collagenase and related proteases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGCAT CACTCGGCCC TCTGCTTTAT TGCTGGCCAA AAGAGAAGGT AATGGAGTTT 
TACAAATCCG TTGCCGATAG TTCGATCCCA TTAGTTTATT TGGGCGAAAC CATATGCAGT
CGACGACGAG AACTCAAATT TTCTGACTAT ATGGAAATAG CGAATATGTT GAGAGAGTCG
GGTAAAGAGG TCGTTATCTC TACATTGGCC CTACTCGAAG CCCCCTCTGA ATATAGCGAA
TTGAAGAAAC AGGTCGCTAA TGGTGAGTTT ATCATCGAAG CCAATGATAT GGGGGCCGTT
CAGGCTGCCA AGGAAAAAGG CCTGCCCTTT ATTTGCGGAC CAACGGTAAA TAACTATAAT
CTGGCCAGCT TAAAAAAACT TCATGCTTGG GGCATGCAGC GATTCGTAAT GCCCGTTGAG
TTATCAAAAA ACTGGCTAAA TACGGTACTT TCGGTCGAGA AACCAGGATT CGAGGTTGAA
GTATTCGGAC ACGGGTATCT GCCTCTTGCA CTCTCTGCAC GTTGTTTTAC AGCCCGGCAT
CAAGGGCTGG CAAAGGATAA ATGTCAAACC ATCTGTCTCT CAAACCCAAA GGGGCTGTTG
GCCCAAACTC AGGAATCTCA ACCGCTACTG AGATTGAACG GTATACAGAC ACAATCGGCG
GCCTGTATCG ATCTTTCACC TGAAATTGGT GAGATGGCAA AAATGGGAGT GGATTACTTC
AGGGTATCGC CTTCCGGCAT GCAGTGTATT TCGCTTGCGG AGCAGCTTTT TGAAGCCGAT
GTTTCGGGGC GTGTAGCGAA TACAGAAGAT CGCTGTAACG GCTACTGGTA TCAAGAGGCT
GGCTTTAATA ATCTGAGTTA A
 
Protein sequence
MKASLGPLLY CWPKEKVMEF YKSVADSSIP LVYLGETICS RRRELKFSDY MEIANMLRES 
GKEVVISTLA LLEAPSEYSE LKKQVANGEF IIEANDMGAV QAAKEKGLPF ICGPTVNNYN
LASLKKLHAW GMQRFVMPVE LSKNWLNTVL SVEKPGFEVE VFGHGYLPLA LSARCFTARH
QGLAKDKCQT ICLSNPKGLL AQTQESQPLL RLNGIQTQSA ACIDLSPEIG EMAKMGVDYF
RVSPSGMQCI SLAEQLFEAD VSGRVANTED RCNGYWYQEA GFNNLS