| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3347 |
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| Symbol | |
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| ID | 5612113 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4070227 |
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| End bp | 4071936 |
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| Gene Length | 1710 bp |
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| Protein Length | 569 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640934285 |
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| Product | acyl-CoA dehydrogenase-like protein |
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| Protein accession | YP_001475079 |
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| Protein GI | 157376479 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1960] Acyl-CoA dehydrogenases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGGGAGAC GAACCCTTAT CCTGAATCCA AAGCTTGAAA GTTATGACCA TCTGGATCCC
CGTTCAAAAG CCTTGATTAA AAAGACGATT GCGTTTTTTG AGAGTAGGGG AAAGGCTAAA
CTCAAAACCG ATGACCATGA GCGAACCTGG TATGCCGATT TTCTCGAGTT CGAGAAGAAA
GAGCAGCTGT TTGCCACATT CCTGACCCCC GAAGGCTACG GAGGCGAAGG GGTCCGTTGG
GACACCTTTC GTAACTGTGC GCTCAACGAA GTATTAGGCT TCTACGGCTT GGCTCATTGG
TATACCTGGC AGGTCTCGAT ACTCGGTTTA GGGCCTATCT GGATAAGTAA CAATGAAGAG
GCAAAACAAC GTGCGGCACA ACTGTTAGAT GAGGGGGGGA TCTTCGCGTT TGGCCTGTCT
GAAAAAGAAC ACGGCGCCGA TATCTACTCC ACCGATATGT GTCTCACCCG GCAAGATGAC
GGCTCCTATC TGGCCAGCGG CAGTAAATAT TATATCGGTA ACGGCAATAA GGCGGCATTG
GTGTCAACCT TTGGTAAGCT CACGGACACC GATGAGTATG TTTTCTTCGT CGCCGACTCT
CAGCATCCAA ATTATGAGTT AGTGCAAAAC GTCGTTAACT CTCAAAATTA TGTCGCCGAA
TATCGTCTCA ATAATTATCC GGTCGCTAAA GCGGATGTCT TAGCGACTGG CCGTGATGCA
TGGGATATGG CGCTCAATAC CGTCAATGTG GGCAAGTTTA ATCTGGGGTG GGCTTCAATT
GGTATCTGTT CACATGCTTA TTTCGAAGCG ATAAACCACG CATCCCATAG ACGACTGTTC
GATCATTACG TTACCGATTT CTTCCATATT AAGCAGTTGT TTATCGACTC CTATGCCCGT
CTTAGTGCTA TGAAATTGTT TGCCCAGCGG GGTGTTGATT ACATGCGTTG TGCCAACCCG
GATGATCGCC GTTACCTCTT ATTCACCCCT ATGGTTAAGA TGAAAGTCAC CACGCAAGGG
GAGGAGGTGA TTAACGAACT TTGGGATGTC ATGGCCGCTA AAGGGTTTGA GAAGAACATG
TATTTCGAGA TGGCGGTGAG AGATATTCGG GCATTGCCAA AGCTTGAAGG GACTGTTCAC
GTTAATATGG CACTCATCTT GAAATTTATG GCCAATTACT TCTTTAAGCC TGCCGAGTAT
CCTGAGACTC CGACGATGGA TGAACCGGTC AATGATACAT TTCTGTTTAA CCAGGGAGCG
ACTAAGGGGC TGGGTAAGAC TCAATTCCAT GATTACCGTA AAGTCTATAA TGGCGTAAAC
CTGCCTAATG TAAATATCTT CAAAAAGCAG ATCCGGTTAT TAAAAATACT GCTGATGGCA
GCCAAACCGA GTAAGGAACA GAGCAAAGAT TTCGATTTTC TGCTGATCTT GGGCGAACTC
TTCACGCTTG TGGTTTATGG TCAGCTTATT TTAGAAAATG CGAAGATAAA ATGGATAGAG
GATGATCTAA TAGAGCAGAT TTTCGATTTT ATGGTGCGTG ACTTTTCAAA ATTTGCGCTG
CAACTGAGTC AAAAAGGCAG CGCTACCCGT GTTCAACAGA TGATATGTAA TCGAATGATT
AAGCGTCCGG CCGTCGATGA GGCGCGTAAT ACCCGTGTGT GGGAAAACTA CGTTTATACC
ATGAAAGATC AATATGAGAT GAACCCGTAA
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| Protein sequence | MGRRTLILNP KLESYDHLDP RSKALIKKTI AFFESRGKAK LKTDDHERTW YADFLEFEKK
EQLFATFLTP EGYGGEGVRW DTFRNCALNE VLGFYGLAHW YTWQVSILGL GPIWISNNEE
AKQRAAQLLD EGGIFAFGLS EKEHGADIYS TDMCLTRQDD GSYLASGSKY YIGNGNKAAL
VSTFGKLTDT DEYVFFVADS QHPNYELVQN VVNSQNYVAE YRLNNYPVAK ADVLATGRDA
WDMALNTVNV GKFNLGWASI GICSHAYFEA INHASHRRLF DHYVTDFFHI KQLFIDSYAR
LSAMKLFAQR GVDYMRCANP DDRRYLLFTP MVKMKVTTQG EEVINELWDV MAAKGFEKNM
YFEMAVRDIR ALPKLEGTVH VNMALILKFM ANYFFKPAEY PETPTMDEPV NDTFLFNQGA
TKGLGKTQFH DYRKVYNGVN LPNVNIFKKQ IRLLKILLMA AKPSKEQSKD FDFLLILGEL
FTLVVYGQLI LENAKIKWIE DDLIEQIFDF MVRDFSKFAL QLSQKGSATR VQQMICNRMI
KRPAVDEARN TRVWENYVYT MKDQYEMNP
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