Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3344 |
Symbol | |
ID | 5612432 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 4064838 |
End bp | 4068005 |
Gene Length | 3168 bp |
Protein Length | 1055 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640934282 |
Product | signal transduction protein |
Protein accession | YP_001475076 |
Protein GI | 157376476 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3447] Predicted integral membrane sensor domain [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGATATCG AAAAACTAAA ACATCACCTC AGATACCTGG CACTGTGCGC TACCTTGTCC TTCGTTTATT ATCTCTCCGG TCGACTCGGT CTATCGCTGG CATTTGAGCA AGCCGGCGTC AGCCCTGTCT GGCCCCCTAC TGGTATCGCG ATTTCGGCCG TTCTTATTTT TGGTTTCCGG GTCTGGCCGG GGATCATGCT CGGGGCTCTA TTGGTCAACT TGTCGATAGC TTTGCCTTTT AGTGCCGCTA TCTTGATAGC TTTGGGTAAT ACACTCGAAG CCATAGTCGC CGGATATCTA CTGATCCGCT GCGCCGAACG TTACCCATTT ACTCAAGTGA ATCATACCGC CTGGTTTATT GCCATCGCAG TGATGGCCCC CATGTTCAGC GCGACGATAG GGCTTGTTAG CCTGTCTATG CATAATCTTA TCGAGGCGAG CGAATTGGGT ATAGTCTGGA GTACATGGTG GCTCGGGGAT ATCGTCGGCG CTCTGGTTAT CGTACCTCTG CTTTTAACGT GGTTTCGACC TCATGAATCA ATGAATGGTG GGGTTCCGGT CATGGCATTA TGGGGGACTT GCCTGGTTAG CCTGGGACTG GCTTTATTGA TCTTCTCGCC TTGGCATACC GAGTATGATC CGCATCAGCT GCTTATTTTT ATGATGTTGC CACTTTTAAT ATGGACGGCG CTACGTTTTC ATCACCGTGG TTCGACCCTG TTGGTGACGG TTTTTTCAGG TATTGCCATA TCGGGAACGC TGGTCGGTTA TGGTCCATTC GTAATGGAGT CGACGAATCA GTCTCTATTG ACCCTTCAGG CCTCCGTTGG GGCTATCATG GTGACCATAC TGATACTCAT CGCCAGTCAG GAGGAGCGCA AGCGAGTCAA TCGGCGATTG CTACAGGTAC AGCAAGACTT GGAGGCTAAG GTTGGCCAGC GGACCCATGA ACTCTATACA TCCAATAAAC AGCTGGCGCA GGAGGTCACC AGGCAACACC AACTGGGTGA AACATTGAAG TCTTTGCTCA ATGCCACGAA CTTCACCTCT AATGATCAGT TTCTGCAATC ATGTGTCAAA GATCTGGCCA ATGCCTATGG TGCTTATTTT GCTTTTATAG GCATATTTTC CGATAAAACC TGCCAGAGCA TCAAAACGTT AGCGGTATGG GCTGGGGATA AAGTTGAGGA TAATTTTAGC TATCGTCTCC GTGGTACTCC TTGTGAAGAC GCCATGAATC ATAACGTTGA GCTTATCTCC AGTCGTGCGG CTCTACATTA TCCGGAAGAT AAGTTGTTGA ATGAGCTCGA GGTCGACAGT TATTTTGGGG CTCCACTCGT CGCACCGTCG GGGGAAACCA TCGGCATTAT CGCCGTCATG GACAAGAAGG CCATGGATAT CGAGGAGTGG GTGAAACCTG TATTGGGACT GTTTGCTAAT CGTGTGGCGT TGGAGTTACA ACGTCAGTCT ACACACAAAG AGATGGAGAT GGCGGCCAGT GTTTTCAAGG AGAGTGCCGA GGCGATAGTC ATCTGCGATA GTGAAGACAA GATACTTAGG GTTAACCCGG CATTTTATAA GATCACAGGT TATAGCCAAA TCGAGGTTGT CGGGCAATCC CCCCAGCTTT TACAATCAGA TCGACCCATT CAATCAATGC TCCACAATCG TGAAGCTGCA CTGAAGAAGA ATGATATCTG GCAATGTGAG GTTTCCGGAT ATAGAAAGAA TGGGGAGCAC TTTCTGAGCT GGCAAACGGT TATTCCGGTG AAGGATGAAA ATGGCGACAC TCAACAGATT ATTTATATAT TCAGTGATAT TACCGAGCGA AAGTTATTTG AAGAGCACAT CTATAATCTG GCGCATCATG ACAGCCTAAC TCAGTTGCCT AATCGAGTTG CATTTCAATT ACAGATGAAT ACGGCGCTTG AGCGTGCGAA GCGGTCGAAG ACTCAGATGG CGGTTATGTT CATCGACTTA GATCATTTCA AGATGATCAA TGATACTTCG GGTCATCCTG TGGGGGATCT GTTGTTGCAA CAGGTTGCCG AGAGGTTCAA GAGGGCGCTT CGTAAAGAGG ATGTGATCTC ACGATTCGGT GGCGATGAAT TTACAGTATT GCTCTCCAAT ACCCGAACCG ATAATGCCAC AACAGTGGTC GCCAGAAAGC TATTGGCCTG TTTTTACGAG CCATTTAAGC TGCCTAGTAG TGAGGTGGTG ATATCGGCCA GTATAGGCAT TGGAGTGTTT CCCGATAATG GTGATAGTGT CGATAGTTTA ATGATGAATG CTGACAGCGC CATGTACAGG GCGAAGGAGA AGGGGCGTAA CTGTTTTCAA TTCTATACCA AAGAGATGAA TCAATATGCT CAGGAGAGGC TTGAGTTAGA ACTGGATCTG AGAAAAGCGT TGGAGCGCGA TGAGTTTGTA CTCCACTATC AGCCTCAATT TGACCCTAAT GGACGTATTA TCGGTTGTGA GGCTCTCATT CGTTGGCAGC ATCCGGATAA AGGCTTGCTC TCTCCCGGAG AGTTTATCAA TATGGCTGAA ATCACAGGCT TAATCGTCCC TATAGGTAAG TGGGTAATCG ATACCGCTTG TATGCAGCAC AAGATGTGGC TTTCGCAAGG CTATCCGGCG CTTAATATTT CAGTCAACCT GTCGGGGAGG CAGTTTTTAC ATCATGATCT TCTCGAGACG GTCAAAAATG CCATTACAAC TTCTGGTATT ACCCCCTCTT GCCTGGAGTT GGAGCTCACA GAAAGTATTA TGATGGTGAA TGTCGAAGAA ACCATACGGA CCCTCAATGC CATCAGTAGT TTGGGGATCC ATATGTCGAT CGATGACTTC GGTACAGGTT ACTCCTCTAT GTCATGCCTG AAACGCTTTC CTGTGAATAA GCTGAAAATT GATCAGTCAT TCGTTCGTGG CTTGCCTCAG GACAAAGAGG ATGTCGCCAT CGTCAAATCC ATTATTGTTA TGGCTCATGC ACTCAACTTG ACCGTTATCG CCGAGGGCGT CGAAACTCTG GAGCAACTCG AATTTCTTAA ATCATCCAGA TGTGAAGAGT TTCAGGGATA TTATTTCAGC CGTCCGATAC TCGCCGCCGA TATTGAGCAA TACCTACAAG CGCTCGCCGA TGAAGATGTA CCTAAAGTGG TGAACTAA
|
Protein sequence | MDIEKLKHHL RYLALCATLS FVYYLSGRLG LSLAFEQAGV SPVWPPTGIA ISAVLIFGFR VWPGIMLGAL LVNLSIALPF SAAILIALGN TLEAIVAGYL LIRCAERYPF TQVNHTAWFI AIAVMAPMFS ATIGLVSLSM HNLIEASELG IVWSTWWLGD IVGALVIVPL LLTWFRPHES MNGGVPVMAL WGTCLVSLGL ALLIFSPWHT EYDPHQLLIF MMLPLLIWTA LRFHHRGSTL LVTVFSGIAI SGTLVGYGPF VMESTNQSLL TLQASVGAIM VTILILIASQ EERKRVNRRL LQVQQDLEAK VGQRTHELYT SNKQLAQEVT RQHQLGETLK SLLNATNFTS NDQFLQSCVK DLANAYGAYF AFIGIFSDKT CQSIKTLAVW AGDKVEDNFS YRLRGTPCED AMNHNVELIS SRAALHYPED KLLNELEVDS YFGAPLVAPS GETIGIIAVM DKKAMDIEEW VKPVLGLFAN RVALELQRQS THKEMEMAAS VFKESAEAIV ICDSEDKILR VNPAFYKITG YSQIEVVGQS PQLLQSDRPI QSMLHNREAA LKKNDIWQCE VSGYRKNGEH FLSWQTVIPV KDENGDTQQI IYIFSDITER KLFEEHIYNL AHHDSLTQLP NRVAFQLQMN TALERAKRSK TQMAVMFIDL DHFKMINDTS GHPVGDLLLQ QVAERFKRAL RKEDVISRFG GDEFTVLLSN TRTDNATTVV ARKLLACFYE PFKLPSSEVV ISASIGIGVF PDNGDSVDSL MMNADSAMYR AKEKGRNCFQ FYTKEMNQYA QERLELELDL RKALERDEFV LHYQPQFDPN GRIIGCEALI RWQHPDKGLL SPGEFINMAE ITGLIVPIGK WVIDTACMQH KMWLSQGYPA LNISVNLSGR QFLHHDLLET VKNAITTSGI TPSCLELELT ESIMMVNVEE TIRTLNAISS LGIHMSIDDF GTGYSSMSCL KRFPVNKLKI DQSFVRGLPQ DKEDVAIVKS IIVMAHALNL TVIAEGVETL EQLEFLKSSR CEEFQGYYFS RPILAADIEQ YLQALADEDV PKVVN
|
| |