Gene Ssed_3344 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3344 
Symbol 
ID5612432 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp4064838 
End bp4068005 
Gene Length3168 bp 
Protein Length1055 aa 
Translation table11 
GC content48% 
IMG OID640934282 
Productsignal transduction protein 
Protein accessionYP_001475076 
Protein GI157376476 
COG category[T] Signal transduction mechanisms 
COG ID[COG3447] Predicted integral membrane sensor domain
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATATCG AAAAACTAAA ACATCACCTC AGATACCTGG CACTGTGCGC TACCTTGTCC 
TTCGTTTATT ATCTCTCCGG TCGACTCGGT CTATCGCTGG CATTTGAGCA AGCCGGCGTC
AGCCCTGTCT GGCCCCCTAC TGGTATCGCG ATTTCGGCCG TTCTTATTTT TGGTTTCCGG
GTCTGGCCGG GGATCATGCT CGGGGCTCTA TTGGTCAACT TGTCGATAGC TTTGCCTTTT
AGTGCCGCTA TCTTGATAGC TTTGGGTAAT ACACTCGAAG CCATAGTCGC CGGATATCTA
CTGATCCGCT GCGCCGAACG TTACCCATTT ACTCAAGTGA ATCATACCGC CTGGTTTATT
GCCATCGCAG TGATGGCCCC CATGTTCAGC GCGACGATAG GGCTTGTTAG CCTGTCTATG
CATAATCTTA TCGAGGCGAG CGAATTGGGT ATAGTCTGGA GTACATGGTG GCTCGGGGAT
ATCGTCGGCG CTCTGGTTAT CGTACCTCTG CTTTTAACGT GGTTTCGACC TCATGAATCA
ATGAATGGTG GGGTTCCGGT CATGGCATTA TGGGGGACTT GCCTGGTTAG CCTGGGACTG
GCTTTATTGA TCTTCTCGCC TTGGCATACC GAGTATGATC CGCATCAGCT GCTTATTTTT
ATGATGTTGC CACTTTTAAT ATGGACGGCG CTACGTTTTC ATCACCGTGG TTCGACCCTG
TTGGTGACGG TTTTTTCAGG TATTGCCATA TCGGGAACGC TGGTCGGTTA TGGTCCATTC
GTAATGGAGT CGACGAATCA GTCTCTATTG ACCCTTCAGG CCTCCGTTGG GGCTATCATG
GTGACCATAC TGATACTCAT CGCCAGTCAG GAGGAGCGCA AGCGAGTCAA TCGGCGATTG
CTACAGGTAC AGCAAGACTT GGAGGCTAAG GTTGGCCAGC GGACCCATGA ACTCTATACA
TCCAATAAAC AGCTGGCGCA GGAGGTCACC AGGCAACACC AACTGGGTGA AACATTGAAG
TCTTTGCTCA ATGCCACGAA CTTCACCTCT AATGATCAGT TTCTGCAATC ATGTGTCAAA
GATCTGGCCA ATGCCTATGG TGCTTATTTT GCTTTTATAG GCATATTTTC CGATAAAACC
TGCCAGAGCA TCAAAACGTT AGCGGTATGG GCTGGGGATA AAGTTGAGGA TAATTTTAGC
TATCGTCTCC GTGGTACTCC TTGTGAAGAC GCCATGAATC ATAACGTTGA GCTTATCTCC
AGTCGTGCGG CTCTACATTA TCCGGAAGAT AAGTTGTTGA ATGAGCTCGA GGTCGACAGT
TATTTTGGGG CTCCACTCGT CGCACCGTCG GGGGAAACCA TCGGCATTAT CGCCGTCATG
GACAAGAAGG CCATGGATAT CGAGGAGTGG GTGAAACCTG TATTGGGACT GTTTGCTAAT
CGTGTGGCGT TGGAGTTACA ACGTCAGTCT ACACACAAAG AGATGGAGAT GGCGGCCAGT
GTTTTCAAGG AGAGTGCCGA GGCGATAGTC ATCTGCGATA GTGAAGACAA GATACTTAGG
GTTAACCCGG CATTTTATAA GATCACAGGT TATAGCCAAA TCGAGGTTGT CGGGCAATCC
CCCCAGCTTT TACAATCAGA TCGACCCATT CAATCAATGC TCCACAATCG TGAAGCTGCA
CTGAAGAAGA ATGATATCTG GCAATGTGAG GTTTCCGGAT ATAGAAAGAA TGGGGAGCAC
TTTCTGAGCT GGCAAACGGT TATTCCGGTG AAGGATGAAA ATGGCGACAC TCAACAGATT
ATTTATATAT TCAGTGATAT TACCGAGCGA AAGTTATTTG AAGAGCACAT CTATAATCTG
GCGCATCATG ACAGCCTAAC TCAGTTGCCT AATCGAGTTG CATTTCAATT ACAGATGAAT
ACGGCGCTTG AGCGTGCGAA GCGGTCGAAG ACTCAGATGG CGGTTATGTT CATCGACTTA
GATCATTTCA AGATGATCAA TGATACTTCG GGTCATCCTG TGGGGGATCT GTTGTTGCAA
CAGGTTGCCG AGAGGTTCAA GAGGGCGCTT CGTAAAGAGG ATGTGATCTC ACGATTCGGT
GGCGATGAAT TTACAGTATT GCTCTCCAAT ACCCGAACCG ATAATGCCAC AACAGTGGTC
GCCAGAAAGC TATTGGCCTG TTTTTACGAG CCATTTAAGC TGCCTAGTAG TGAGGTGGTG
ATATCGGCCA GTATAGGCAT TGGAGTGTTT CCCGATAATG GTGATAGTGT CGATAGTTTA
ATGATGAATG CTGACAGCGC CATGTACAGG GCGAAGGAGA AGGGGCGTAA CTGTTTTCAA
TTCTATACCA AAGAGATGAA TCAATATGCT CAGGAGAGGC TTGAGTTAGA ACTGGATCTG
AGAAAAGCGT TGGAGCGCGA TGAGTTTGTA CTCCACTATC AGCCTCAATT TGACCCTAAT
GGACGTATTA TCGGTTGTGA GGCTCTCATT CGTTGGCAGC ATCCGGATAA AGGCTTGCTC
TCTCCCGGAG AGTTTATCAA TATGGCTGAA ATCACAGGCT TAATCGTCCC TATAGGTAAG
TGGGTAATCG ATACCGCTTG TATGCAGCAC AAGATGTGGC TTTCGCAAGG CTATCCGGCG
CTTAATATTT CAGTCAACCT GTCGGGGAGG CAGTTTTTAC ATCATGATCT TCTCGAGACG
GTCAAAAATG CCATTACAAC TTCTGGTATT ACCCCCTCTT GCCTGGAGTT GGAGCTCACA
GAAAGTATTA TGATGGTGAA TGTCGAAGAA ACCATACGGA CCCTCAATGC CATCAGTAGT
TTGGGGATCC ATATGTCGAT CGATGACTTC GGTACAGGTT ACTCCTCTAT GTCATGCCTG
AAACGCTTTC CTGTGAATAA GCTGAAAATT GATCAGTCAT TCGTTCGTGG CTTGCCTCAG
GACAAAGAGG ATGTCGCCAT CGTCAAATCC ATTATTGTTA TGGCTCATGC ACTCAACTTG
ACCGTTATCG CCGAGGGCGT CGAAACTCTG GAGCAACTCG AATTTCTTAA ATCATCCAGA
TGTGAAGAGT TTCAGGGATA TTATTTCAGC CGTCCGATAC TCGCCGCCGA TATTGAGCAA
TACCTACAAG CGCTCGCCGA TGAAGATGTA CCTAAAGTGG TGAACTAA
 
Protein sequence
MDIEKLKHHL RYLALCATLS FVYYLSGRLG LSLAFEQAGV SPVWPPTGIA ISAVLIFGFR 
VWPGIMLGAL LVNLSIALPF SAAILIALGN TLEAIVAGYL LIRCAERYPF TQVNHTAWFI
AIAVMAPMFS ATIGLVSLSM HNLIEASELG IVWSTWWLGD IVGALVIVPL LLTWFRPHES
MNGGVPVMAL WGTCLVSLGL ALLIFSPWHT EYDPHQLLIF MMLPLLIWTA LRFHHRGSTL
LVTVFSGIAI SGTLVGYGPF VMESTNQSLL TLQASVGAIM VTILILIASQ EERKRVNRRL
LQVQQDLEAK VGQRTHELYT SNKQLAQEVT RQHQLGETLK SLLNATNFTS NDQFLQSCVK
DLANAYGAYF AFIGIFSDKT CQSIKTLAVW AGDKVEDNFS YRLRGTPCED AMNHNVELIS
SRAALHYPED KLLNELEVDS YFGAPLVAPS GETIGIIAVM DKKAMDIEEW VKPVLGLFAN
RVALELQRQS THKEMEMAAS VFKESAEAIV ICDSEDKILR VNPAFYKITG YSQIEVVGQS
PQLLQSDRPI QSMLHNREAA LKKNDIWQCE VSGYRKNGEH FLSWQTVIPV KDENGDTQQI
IYIFSDITER KLFEEHIYNL AHHDSLTQLP NRVAFQLQMN TALERAKRSK TQMAVMFIDL
DHFKMINDTS GHPVGDLLLQ QVAERFKRAL RKEDVISRFG GDEFTVLLSN TRTDNATTVV
ARKLLACFYE PFKLPSSEVV ISASIGIGVF PDNGDSVDSL MMNADSAMYR AKEKGRNCFQ
FYTKEMNQYA QERLELELDL RKALERDEFV LHYQPQFDPN GRIIGCEALI RWQHPDKGLL
SPGEFINMAE ITGLIVPIGK WVIDTACMQH KMWLSQGYPA LNISVNLSGR QFLHHDLLET
VKNAITTSGI TPSCLELELT ESIMMVNVEE TIRTLNAISS LGIHMSIDDF GTGYSSMSCL
KRFPVNKLKI DQSFVRGLPQ DKEDVAIVKS IIVMAHALNL TVIAEGVETL EQLEFLKSSR
CEEFQGYYFS RPILAADIEQ YLQALADEDV PKVVN