| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3342 |
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| Symbol | |
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| ID | 5612430 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4063001 |
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| End bp | 4064386 |
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| Gene Length | 1386 bp |
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| Protein Length | 461 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640934280 |
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| Product | peptidase U32 |
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| Protein accession | YP_001475074 |
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| Protein GI | 157376474 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0826] Collagenase and related proteases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTAAAC CTGAGCTATT GTCTCCTGCT GGGACACTGA AAAATATGCG TTACGCTTTC
GCCTATGGCG CTGACGCTGT CTACGCAGGC CAGCCCAGAT ACAGCCTTAG GGTGCGAAAT
AATGACTTTA AGATGGAAAA TCTGGCAACG GGTATTCAAG AAGCTCATGG CTTAGGTAAA
AAGCTCTACG TGGTCAGCAA CATTGCGCCT CACAATACTA AGCTTAAGAC CTATATCAAG
GACATGGAAC CTGTCGTCTC CATGAACCCT GACGCCATAA TCATGTCAGA TCCAGGCTTG
ATCATGATGG TAAGAGAAGC CTTTCCCGAT CAAGTGGTCC ACCTTTCAGT TCAGGCCAAT
GCCATCAACT GGGCATCGGT GAAGTTCTGG CAGCAACAAG GCATAAAGCG TGTGATCCTC
TCTCGTGAGC TCTCACTCGA TGAGATTGAA GAGATCCGCC AACGTTGCCC CGATATCGAG
TTAGAAGTAT TCGTTCATGG TGCACTCTGC ATGGCTTACT CGGGTCGTTG CCTGCTTTCC
GGCTATATCA ACAAACGCGA TCCAAACCAG GGGACCTGCA CCAATTCATG CCGCTGGAAA
TATGATGCCC ACGAAGCCAA AGAGACCATG GAAGGCGACA TCGTTGCAGT GAACCCTCAA
GGGCTTGTTG ATCAAAATGG TGTGCAATTT GAGAAGCCAA CATTAGGTGA AGGTCAACCA
AGCGATCAAA TTGTATTGTT GCAAGAAGCC GGACGTCCGG GCGAGTATAT GCCCGCCTTC
GAAGATGAGC ATGGTACTTA CATCATGAAC TCTAAAGATC TTCGCGCCAT TCAGCATGTC
GAGCGCTTGA GTAAGATGGG CATCGACTCA TTAAAGATCG AAGGTCGTAC TAAATCATTT
TATTATGTTG CGCGTACCGC TCAGCTCTAT CGTCAGGCTA TCGAAGATGC GGCTTCGGGC
AGGGATTTCG ACCGTACATT GATGCATAAC CTGGAAGGCC TGGCACATAG AGGCTATACC
GAAGGCTTCC TGCGTCGTCA TGTCCATGAT GAGTACCAGA ACTACGATTA TGGCTACTCT
ATCAGCGATA CCCAACAGTT TGTTGGTGAG TTCACGGGTA AGCGTAACGA CGAAGGCATG
GCTGAAATCG ACGTGAAGAA TAAATTTAGC GTCGGCGATA GTGTCGAAGT GATGACTCCT
CAGGGTAACC TGACACTCAC TATTGACTCA CTCATTAACC GTAAGGGTGA AAGTGTGGAG
GCCGGGTTAG GTTCCGGACA CTTTGTGTTC TTGTCGGTGC CGGCTAACGT AGAGTTAGAT
AAAGCTGTAT TATTGCGTAA CTTGCCACAA GGTCAAGATA CCCGTAACCC GCACTCACCG
GCATAA
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| Protein sequence | MFKPELLSPA GTLKNMRYAF AYGADAVYAG QPRYSLRVRN NDFKMENLAT GIQEAHGLGK
KLYVVSNIAP HNTKLKTYIK DMEPVVSMNP DAIIMSDPGL IMMVREAFPD QVVHLSVQAN
AINWASVKFW QQQGIKRVIL SRELSLDEIE EIRQRCPDIE LEVFVHGALC MAYSGRCLLS
GYINKRDPNQ GTCTNSCRWK YDAHEAKETM EGDIVAVNPQ GLVDQNGVQF EKPTLGEGQP
SDQIVLLQEA GRPGEYMPAF EDEHGTYIMN SKDLRAIQHV ERLSKMGIDS LKIEGRTKSF
YYVARTAQLY RQAIEDAASG RDFDRTLMHN LEGLAHRGYT EGFLRRHVHD EYQNYDYGYS
ISDTQQFVGE FTGKRNDEGM AEIDVKNKFS VGDSVEVMTP QGNLTLTIDS LINRKGESVE
AGLGSGHFVF LSVPANVELD KAVLLRNLPQ GQDTRNPHSP A
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