Gene Ssed_3337 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3337 
Symbol 
ID5609794 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp4055530 
End bp4058592 
Gene Length3063 bp 
Protein Length1020 aa 
Translation table11 
GC content46% 
IMG OID640934275 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 
Protein accessionYP_001475069 
Protein GI157376469 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATTCTG ATGTCATTTT TTCTTTAGTG CAGAATGCGG CGCTGCTTCT GGCTATGGTA 
TTTGTGTACG ATGCCGTTCC CAGAAAGCAG AGACATGAGT ACTTTTTTCT TTGGCGGATT
TCCGTCGGAA CCGTCATAGG TGGGATCACC GTGACGACCA TGATGACTCA CTGGGAATAT
CAGCCTGGGG TCTTTTTCGA TGCGCGTTCC ATTATCCTGG GGATTTCCGG GCTCTTCTTC
GGCGGTTTAC CCACTTTTGT TGCCATGGTT ATCGCATCCG TTTATCGGTT CTTAGAGGGA
GGAAGTGGCT GGTGGGCCGG AATCGGCATC ATTTTTTCCT CTGGCCTCCT GGGCAGCTAT
TGGCGATATT ATCGAAAGAG TTTCATTGCT GATCTCTCCT TTAAAGAACT CTATGCTTTT
GGTTTTATCC TACAAGTCAT TACCCTTCTA TGGATGTTTG TACTGCCCTT TGAGATGGCG
ATAAGCATCT TATCTCGAAT TAGTTTTCCG GCATTAATCG TTTACCCCAT CGCGTTTGTC
TTGCTTGGCC TGTTGCTCTC CAGGCGATTG GAGATTGAAC GAGACGCCAA GATCCAGCTT
CAGGATGACT TCATTTTTCG CTCCCAATTT AATGTTGGCA ATATTGGTAT TGCGATCTCT
TCGGTGGATC AGCATTGGAT AAAGGTGAAT CCTCGCATGT GTCAGATGTT GCAATATACC
GAGGAGGAGT TGCTGTTAAA AACCTGGGCC GAAATGACCT ATTTCGATGA TCTGCAAACG
GATCTTAACC TGTTTAACCG CATGTTAGAT GGTGAGTTTG ATGAGTATGA GATGGATAAA
CGTTATGTGG CTAAAGATGG CTCGATTGTC TATACCCACT TAACGGTAGC GTGTCAGAGA
GTGAATAACC AAGTTCAGTT GGTGATAGCG GGCTTATTGG ATATCACCTC TCAGAAACAA
GCAGAGTCAG CCATGTCTAA AAGTCAGGAG CAGTTAGCAC TGGTATTAGA CAGTAGTGAA
CTTGGGCTAT GGGATTGGGA TCTTAAATCG GATAAAGTCG ACCGTAATGA CTATTGTGCC
AAGCTTTTGG GCTCTGGCGT TGAAGAACTT AATGATGATG GACGATTATG GATTAATGCG
ATTCACCCCC AGGACAGGCT GGAGGTATTG CATGCGATGG ATAAACACCT CAAGGGAGAG
AATCCTCAAT ACACAGTCGA ATATCGATTA AATACATTCA GCGGTGAAAC CCGCTGGATA
CTCGACCGTG GCAAGGTGGC GAGTAAAGAC GCTAATGGTG CTCCCCTTCG CGTGTGCGGT
ACGAATACGG ATATCACCGA CAGGAAGCGG GGAGAGGAGT CATTACAACT CGCGGCATCT
GTGTATAACA ACTCGAGTGA GGCGATGAGT GTTCAGGATA GCTTGGGTAA TATCATCACC
ATCAACTCTG CCTTTACCGA TATAACCGGC TATTTGGAGG GCGAGGTCCT CAGTAAACAT
ATTCGAATAC TGGAATGTGA TAGAACCAGT AAAAATCAAT ATGAACAGAT GAATATGCAG
ATAACCCAAA CCGGTCGGTG GCAGGGGGAA GTGTGGTTGA AGCATAAGAG TGGAACCGAA
TTTATTGTCT GGCTGACTAT CAATACCATT TTAGATAACA AGGGGGAGGT CTATCGCCGA
GTCGCACTGT TTTCCGATAT TACCGAGAAG AAACAGGCCG AACATATTAT CTGGAAGCAG
GCGAACTATG ATCCTCTAAC CGGTTTACCT AATCGAAGAA TGCTGTTGGA ATATCTGGGC
ACCGAATTAC TTAAGTCAGA CCGAAATAAA AAACATTTTG CACTGATGTT TCTCGATTTA
GATTATTTCA AAGAGGTCAA TGATAGCTTA GGTCATGATA TTGGCGATCT GCTCCTTGTG
GAAACGGCTA AACGCCTCAA GGGGTGCATT CGTGAATCAG ATGTGGTGGC AAGGTTAGGA
GGTGATGAGT TTACCGTCGT ACTTTCGGCG ATACAAGATC ACAAAGGGGT TGAAAGAGTT
GCCGAAAACA TTCTCTCCAG GCTGGCAGAG CCTTTTAACT TAGATAATGA AAGTGCTTAT
ATCAGTGCGA GTATCGGGAT CACCCTCTAT CCTGACGATG CCTCAAGCAT TGATGGTCTG
CTCAAGCATG CGGATCAAGC CATGTACGCC GCAAAAGAGC AGGGAAGAAA TCGATACCAT
TATTTTACCC CTTCCATGCA GGAGTATGCC AAATATCGGA TGCTGCTTAT CCGAGACTTA
CGCAAGGCCA TAATACGCAA AGAGTTTGAA ATTTATTATC AACCGATCAT TGAGTTAACC
GATTCCAAAG TGTTTAAAGC CGAAGCGCTG ATCCGTTGGC ATCACCCCGT CAGAGGGGTC
GTATCACCCG GTGAGTTTAT TCCCGTAGCC GAAGAGACGG GCTTAATCAT CGAAATCGGC
AACTGGGTAT TTGAGCAAGC TGCGAAACAG AGTGCAATGT GGCGTGAACG TTTTGGCGTC
GCGATACAGA TCAGCATTAA TAAATCTCCG ATCCAATTCA GGGATGAGGG AGAGAGCTTC
GTCGATTGGA TTGAGCAGTT AAAAAAGCTT AACCTCGAGA GCAACGGGAT CTGCGTGGAG
ATAACCGAAG GTCTGTTACT GGATGCGAGC ATGGGCGTCT CAGAAAAGCT GCTCGCATAC
CGGGATGCTG GGGTTCAGGT TTCTCTCGAT GATTTTGGTA CGGGTTACTC GTCACTGGCC
TATCTAAAAA AATTCGATAT CGATTATCTT AAAATTGATC AATCCTTCAC CCGTAACTTA
GAGACTGACT CTAATGACGT TACCCTTTGC GAAGCGATTA TCGTGATGGC TCACAAGCTT
GGAATGAAAG TTATTGCCGA AGGCGTCGAA ACCGAGTACC AGAAAAAAAT CTTGTTTGAA
GCGGGTTGTG ATTATGGTCA AGGCTACCTT TTTTCAAAAC CGATTCCGGT CGCAGATTTT
GAAGCGAAAT ATCTTATCGG TTTAACAGAG TTACCCAATG AAAAGGGTTC GCCTAGCCAG
TGA
 
Protein sequence
MDSDVIFSLV QNAALLLAMV FVYDAVPRKQ RHEYFFLWRI SVGTVIGGIT VTTMMTHWEY 
QPGVFFDARS IILGISGLFF GGLPTFVAMV IASVYRFLEG GSGWWAGIGI IFSSGLLGSY
WRYYRKSFIA DLSFKELYAF GFILQVITLL WMFVLPFEMA ISILSRISFP ALIVYPIAFV
LLGLLLSRRL EIERDAKIQL QDDFIFRSQF NVGNIGIAIS SVDQHWIKVN PRMCQMLQYT
EEELLLKTWA EMTYFDDLQT DLNLFNRMLD GEFDEYEMDK RYVAKDGSIV YTHLTVACQR
VNNQVQLVIA GLLDITSQKQ AESAMSKSQE QLALVLDSSE LGLWDWDLKS DKVDRNDYCA
KLLGSGVEEL NDDGRLWINA IHPQDRLEVL HAMDKHLKGE NPQYTVEYRL NTFSGETRWI
LDRGKVASKD ANGAPLRVCG TNTDITDRKR GEESLQLAAS VYNNSSEAMS VQDSLGNIIT
INSAFTDITG YLEGEVLSKH IRILECDRTS KNQYEQMNMQ ITQTGRWQGE VWLKHKSGTE
FIVWLTINTI LDNKGEVYRR VALFSDITEK KQAEHIIWKQ ANYDPLTGLP NRRMLLEYLG
TELLKSDRNK KHFALMFLDL DYFKEVNDSL GHDIGDLLLV ETAKRLKGCI RESDVVARLG
GDEFTVVLSA IQDHKGVERV AENILSRLAE PFNLDNESAY ISASIGITLY PDDASSIDGL
LKHADQAMYA AKEQGRNRYH YFTPSMQEYA KYRMLLIRDL RKAIIRKEFE IYYQPIIELT
DSKVFKAEAL IRWHHPVRGV VSPGEFIPVA EETGLIIEIG NWVFEQAAKQ SAMWRERFGV
AIQISINKSP IQFRDEGESF VDWIEQLKKL NLESNGICVE ITEGLLLDAS MGVSEKLLAY
RDAGVQVSLD DFGTGYSSLA YLKKFDIDYL KIDQSFTRNL ETDSNDVTLC EAIIVMAHKL
GMKVIAEGVE TEYQKKILFE AGCDYGQGYL FSKPIPVADF EAKYLIGLTE LPNEKGSPSQ