Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3337 |
Symbol | |
ID | 5609794 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 4055530 |
End bp | 4058592 |
Gene Length | 3063 bp |
Protein Length | 1020 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640934275 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
Protein accession | YP_001475069 |
Protein GI | 157376469 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGATTCTG ATGTCATTTT TTCTTTAGTG CAGAATGCGG CGCTGCTTCT GGCTATGGTA TTTGTGTACG ATGCCGTTCC CAGAAAGCAG AGACATGAGT ACTTTTTTCT TTGGCGGATT TCCGTCGGAA CCGTCATAGG TGGGATCACC GTGACGACCA TGATGACTCA CTGGGAATAT CAGCCTGGGG TCTTTTTCGA TGCGCGTTCC ATTATCCTGG GGATTTCCGG GCTCTTCTTC GGCGGTTTAC CCACTTTTGT TGCCATGGTT ATCGCATCCG TTTATCGGTT CTTAGAGGGA GGAAGTGGCT GGTGGGCCGG AATCGGCATC ATTTTTTCCT CTGGCCTCCT GGGCAGCTAT TGGCGATATT ATCGAAAGAG TTTCATTGCT GATCTCTCCT TTAAAGAACT CTATGCTTTT GGTTTTATCC TACAAGTCAT TACCCTTCTA TGGATGTTTG TACTGCCCTT TGAGATGGCG ATAAGCATCT TATCTCGAAT TAGTTTTCCG GCATTAATCG TTTACCCCAT CGCGTTTGTC TTGCTTGGCC TGTTGCTCTC CAGGCGATTG GAGATTGAAC GAGACGCCAA GATCCAGCTT CAGGATGACT TCATTTTTCG CTCCCAATTT AATGTTGGCA ATATTGGTAT TGCGATCTCT TCGGTGGATC AGCATTGGAT AAAGGTGAAT CCTCGCATGT GTCAGATGTT GCAATATACC GAGGAGGAGT TGCTGTTAAA AACCTGGGCC GAAATGACCT ATTTCGATGA TCTGCAAACG GATCTTAACC TGTTTAACCG CATGTTAGAT GGTGAGTTTG ATGAGTATGA GATGGATAAA CGTTATGTGG CTAAAGATGG CTCGATTGTC TATACCCACT TAACGGTAGC GTGTCAGAGA GTGAATAACC AAGTTCAGTT GGTGATAGCG GGCTTATTGG ATATCACCTC TCAGAAACAA GCAGAGTCAG CCATGTCTAA AAGTCAGGAG CAGTTAGCAC TGGTATTAGA CAGTAGTGAA CTTGGGCTAT GGGATTGGGA TCTTAAATCG GATAAAGTCG ACCGTAATGA CTATTGTGCC AAGCTTTTGG GCTCTGGCGT TGAAGAACTT AATGATGATG GACGATTATG GATTAATGCG ATTCACCCCC AGGACAGGCT GGAGGTATTG CATGCGATGG ATAAACACCT CAAGGGAGAG AATCCTCAAT ACACAGTCGA ATATCGATTA AATACATTCA GCGGTGAAAC CCGCTGGATA CTCGACCGTG GCAAGGTGGC GAGTAAAGAC GCTAATGGTG CTCCCCTTCG CGTGTGCGGT ACGAATACGG ATATCACCGA CAGGAAGCGG GGAGAGGAGT CATTACAACT CGCGGCATCT GTGTATAACA ACTCGAGTGA GGCGATGAGT GTTCAGGATA GCTTGGGTAA TATCATCACC ATCAACTCTG CCTTTACCGA TATAACCGGC TATTTGGAGG GCGAGGTCCT CAGTAAACAT ATTCGAATAC TGGAATGTGA TAGAACCAGT AAAAATCAAT ATGAACAGAT GAATATGCAG ATAACCCAAA CCGGTCGGTG GCAGGGGGAA GTGTGGTTGA AGCATAAGAG TGGAACCGAA TTTATTGTCT GGCTGACTAT CAATACCATT TTAGATAACA AGGGGGAGGT CTATCGCCGA GTCGCACTGT TTTCCGATAT TACCGAGAAG AAACAGGCCG AACATATTAT CTGGAAGCAG GCGAACTATG ATCCTCTAAC CGGTTTACCT AATCGAAGAA TGCTGTTGGA ATATCTGGGC ACCGAATTAC TTAAGTCAGA CCGAAATAAA AAACATTTTG CACTGATGTT TCTCGATTTA GATTATTTCA AAGAGGTCAA TGATAGCTTA GGTCATGATA TTGGCGATCT GCTCCTTGTG GAAACGGCTA AACGCCTCAA GGGGTGCATT CGTGAATCAG ATGTGGTGGC AAGGTTAGGA GGTGATGAGT TTACCGTCGT ACTTTCGGCG ATACAAGATC ACAAAGGGGT TGAAAGAGTT GCCGAAAACA TTCTCTCCAG GCTGGCAGAG CCTTTTAACT TAGATAATGA AAGTGCTTAT ATCAGTGCGA GTATCGGGAT CACCCTCTAT CCTGACGATG CCTCAAGCAT TGATGGTCTG CTCAAGCATG CGGATCAAGC CATGTACGCC GCAAAAGAGC AGGGAAGAAA TCGATACCAT TATTTTACCC CTTCCATGCA GGAGTATGCC AAATATCGGA TGCTGCTTAT CCGAGACTTA CGCAAGGCCA TAATACGCAA AGAGTTTGAA ATTTATTATC AACCGATCAT TGAGTTAACC GATTCCAAAG TGTTTAAAGC CGAAGCGCTG ATCCGTTGGC ATCACCCCGT CAGAGGGGTC GTATCACCCG GTGAGTTTAT TCCCGTAGCC GAAGAGACGG GCTTAATCAT CGAAATCGGC AACTGGGTAT TTGAGCAAGC TGCGAAACAG AGTGCAATGT GGCGTGAACG TTTTGGCGTC GCGATACAGA TCAGCATTAA TAAATCTCCG ATCCAATTCA GGGATGAGGG AGAGAGCTTC GTCGATTGGA TTGAGCAGTT AAAAAAGCTT AACCTCGAGA GCAACGGGAT CTGCGTGGAG ATAACCGAAG GTCTGTTACT GGATGCGAGC ATGGGCGTCT CAGAAAAGCT GCTCGCATAC CGGGATGCTG GGGTTCAGGT TTCTCTCGAT GATTTTGGTA CGGGTTACTC GTCACTGGCC TATCTAAAAA AATTCGATAT CGATTATCTT AAAATTGATC AATCCTTCAC CCGTAACTTA GAGACTGACT CTAATGACGT TACCCTTTGC GAAGCGATTA TCGTGATGGC TCACAAGCTT GGAATGAAAG TTATTGCCGA AGGCGTCGAA ACCGAGTACC AGAAAAAAAT CTTGTTTGAA GCGGGTTGTG ATTATGGTCA AGGCTACCTT TTTTCAAAAC CGATTCCGGT CGCAGATTTT GAAGCGAAAT ATCTTATCGG TTTAACAGAG TTACCCAATG AAAAGGGTTC GCCTAGCCAG TGA
|
Protein sequence | MDSDVIFSLV QNAALLLAMV FVYDAVPRKQ RHEYFFLWRI SVGTVIGGIT VTTMMTHWEY QPGVFFDARS IILGISGLFF GGLPTFVAMV IASVYRFLEG GSGWWAGIGI IFSSGLLGSY WRYYRKSFIA DLSFKELYAF GFILQVITLL WMFVLPFEMA ISILSRISFP ALIVYPIAFV LLGLLLSRRL EIERDAKIQL QDDFIFRSQF NVGNIGIAIS SVDQHWIKVN PRMCQMLQYT EEELLLKTWA EMTYFDDLQT DLNLFNRMLD GEFDEYEMDK RYVAKDGSIV YTHLTVACQR VNNQVQLVIA GLLDITSQKQ AESAMSKSQE QLALVLDSSE LGLWDWDLKS DKVDRNDYCA KLLGSGVEEL NDDGRLWINA IHPQDRLEVL HAMDKHLKGE NPQYTVEYRL NTFSGETRWI LDRGKVASKD ANGAPLRVCG TNTDITDRKR GEESLQLAAS VYNNSSEAMS VQDSLGNIIT INSAFTDITG YLEGEVLSKH IRILECDRTS KNQYEQMNMQ ITQTGRWQGE VWLKHKSGTE FIVWLTINTI LDNKGEVYRR VALFSDITEK KQAEHIIWKQ ANYDPLTGLP NRRMLLEYLG TELLKSDRNK KHFALMFLDL DYFKEVNDSL GHDIGDLLLV ETAKRLKGCI RESDVVARLG GDEFTVVLSA IQDHKGVERV AENILSRLAE PFNLDNESAY ISASIGITLY PDDASSIDGL LKHADQAMYA AKEQGRNRYH YFTPSMQEYA KYRMLLIRDL RKAIIRKEFE IYYQPIIELT DSKVFKAEAL IRWHHPVRGV VSPGEFIPVA EETGLIIEIG NWVFEQAAKQ SAMWRERFGV AIQISINKSP IQFRDEGESF VDWIEQLKKL NLESNGICVE ITEGLLLDAS MGVSEKLLAY RDAGVQVSLD DFGTGYSSLA YLKKFDIDYL KIDQSFTRNL ETDSNDVTLC EAIIVMAHKL GMKVIAEGVE TEYQKKILFE AGCDYGQGYL FSKPIPVADF EAKYLIGLTE LPNEKGSPSQ
|
| |