Gene Ssed_3335 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3335 
Symbol 
ID5609609 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp4052708 
End bp4054099 
Gene Length1392 bp 
Protein Length463 aa 
Translation table11 
GC content44% 
IMG OID640934273 
Producthypothetical protein 
Protein accessionYP_001475067 
Protein GI157376467 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000697045 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACTAC TGAAAACAGC AGCTGCGGCT GCAATATCAA TGGCGTTATT AGCTGGATGT 
AATGACGAAA CTAACAACAT CTATCCACCA GAGCCAACCG AACCAACGAA CGTTCGTTTC
GCGACATACA ACCTCTCTTT CGATCGTTAT ACCTTTGAAG ACCTTGTCAC TGAAATGCAG
TTCTCTGCAC CAGAGCAAGA AGCCTTGATG ACCAAATGGT TTGAAGATGA ACTAACTGAA
GATGAATTAA AAGTTATCGA AAAAATCATT CAGATCCGTA ACGTTGCAGC CGTAATTCAA
ACTGAGCGTC CAGCGGTATT GATGATGGGT GAGTTTAACA ACGATGGCCT GGGCGAGAAC
CAGGATGCAA TTAATGGCTT CCGTTTAAAC TATCTTGCAG TGCCACAAAA TGGTCTGGGC
ACAACCTCTG ATGAGAAGAA GATGTTAGAG CCAATTCAGT TTGCTTATAC TGAGAACTTC
TCAACAAATA CAGGCCTGTT AAGTGAATTT GATCTAGACC GTAATGGTAC TGTCGCACTT
CCTGGCGATG CTTGGGGCTA TGGTAACTAC CACGGACAGT ATGCATTTGG CCTACTATCA
CAGTACCCAA TTGATACAGA TAACATCCGT ACTTTCCAAG ACTTTAAGTG GAAAGATATG
CCTGGCGAAA CTAACCCTGT GATCACTGTT TGTGATAATC CAGACAAGCC TATTCCTGAT
GGATTAGCGT GTGGAGATGA GTGGTACACA GCCGAAGCAT GGGCACAGAA GCCACTTTCT
TCTAAAAACC ATGTCGATGC GCCAATTCTT ATCCCAACCG CCGATGGTGA GAAAGTTGTT
CACCTACTAC TATCTCACCC AACACCACCA GTGTTCGATT ACATCACTGA AAACAACAAG
TTGTTAAACA GTGCTGAGAT CAAATTCTGG AGTGAATATG TATCAAATGC CGACTACATC
TACGATGATG CTGGCGTTAA AGGTGGTTTA GGTTTGGATG CATCTTTCGT GGTTATGGGC
GATCTTAACG CCGACCCTGA AAATGGTGAT GGCTTTCTGG AGTCAATTCA GGATCTAATG
AATCATGAGC GTGTAAACGT GCTTGCTACA GATGGTGTTT ACGCGCCAAA CAGCCTGGGT
TCAACTGAGT GTGTTGCACT TGGTGATTGT GGTGATAGCA TCTACCCCGA TCGTATTACC
AGTACCTTTG GACTACGTGT CGATCACGCT ATCCCATCAA ATGATCTAAA CATCATCGAC
TCAGGCGTAT TCTGGCCGGC AACCTTCGAA GAAGGTCGTT TATTGATGAA CGATGAGCGT
GTAGGGAAAT GGGGTAACGG TAAAGATATC TCTTCCGATC ACCGCCTGGT ATGGATTGAA
GCAGAGCTTT AA
 
Protein sequence
MKLLKTAAAA AISMALLAGC NDETNNIYPP EPTEPTNVRF ATYNLSFDRY TFEDLVTEMQ 
FSAPEQEALM TKWFEDELTE DELKVIEKII QIRNVAAVIQ TERPAVLMMG EFNNDGLGEN
QDAINGFRLN YLAVPQNGLG TTSDEKKMLE PIQFAYTENF STNTGLLSEF DLDRNGTVAL
PGDAWGYGNY HGQYAFGLLS QYPIDTDNIR TFQDFKWKDM PGETNPVITV CDNPDKPIPD
GLACGDEWYT AEAWAQKPLS SKNHVDAPIL IPTADGEKVV HLLLSHPTPP VFDYITENNK
LLNSAEIKFW SEYVSNADYI YDDAGVKGGL GLDASFVVMG DLNADPENGD GFLESIQDLM
NHERVNVLAT DGVYAPNSLG STECVALGDC GDSIYPDRIT STFGLRVDHA IPSNDLNIID
SGVFWPATFE EGRLLMNDER VGKWGNGKDI SSDHRLVWIE AEL