| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3333 |
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| Symbol | |
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| ID | 5609607 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4049933 |
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| End bp | 4051279 |
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| Gene Length | 1347 bp |
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| Protein Length | 448 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934271 |
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| Product | multi anti extrusion protein MatE |
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| Protein accession | YP_001475065 |
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| Protein GI | 157376465 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0107095 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGCTG ATGTGTCTTC CCAAGACCAG GCTTTAGTTA ACGATCCAAT TCATAAGCTT
TTTTGGCGAT ATACCATTCC CACTATTGCT TCGATGTTGG TGACGGGGAT CTATGTCGCT
ATCGACGGCA TGTTCATTGG TCATTACCTG GGAGAAACCG GTCTGGCTGG GATGATACTG
GCTTATCCCA TCGGTGCTGT ACTCTATGCC ATAGGCGCCC TGTTTGGTAT GGGCGGTGCG
GCGCTGGTTT CCATAAATTT AGGTCAGGGA GAAGTTGCTA AGGCTCGAAA AATACTCGGA
AATACTTTCA GTTTATGCCT TATTTCAGGA ACTGTTTTTG CTCTATTTGG AACCCGTTAC
TCTCGTGAAC TGTTACAACT TCTGGGGGCG GAGGGAGAGG TATTAAACAG CGCCTATGAT
TACCTCTTTT GGTATTTTGC TCTCGGCTAT TTTCCTATAA TCTCGATGGC CTTCAGCGCT
TTATTAAGAA ATGACGGCAG GCCAGGTTTC GTCACTTATG TGCTTATCTT GGGTGGCTGT
CTGAATGCGG TATTAGACTG GCTGTTTATC GTCGTTTTTC CCTTCGGGTT AGTGGGGGCC
GCCATCGCAA CCATGATTTC GCAAGCGGTC ACCGGCTTAC TCTGCTTACA GCATTTCTTT
ACTGCTAATA CTCGTTTACG TATTAACTGG CAGCAGATGT CGCTTAAACT CGACCATTGC
CTGAATATCC TCAGGGTCGG TCTGCCTAGT TTTCTGTTGA GCCTCTACCT AACGATAGTC
TTAACGCTGC ATAACATGGC CTTCTTGTGG GTCGGTACGC CTATTCATGT GGCGGCTTAT
GGTGTGGTGA GTTATACCGA GGCATTTTTC TACCTTATTT TTGAAGGCAT CGCCTTCGGT
ACTCAACCTA TCTTCAGTTT TAATGCGGGT GCCGGGCGCT ATGACAGGGT CTTTAAAACC
TTGAAAATTG CGTTTGGGAT CGCCTTGGTA ACGGCTTTTG TCGGTTTATT GTTCATCTAC
ATCAAGCCCT TTTGGATGGT CTATATCTTT GCCGGTGATA ACCCGCAACT AACCCCCTAT
GCCATAGAGG GGATGCGACT CTACTTCTGG GGCTTGCCGA TGGAGGGGCT GCTATTGGTC
GGGGCGAGTT TTTTCCAGGC GATTAACTGC TCCAGAGAAG CCTCCATGTT GACCGGCATG
AAGCTTGTCT TAATCGCTTT AGTTATCTGT CTGTTTGCCT GGGCATTCGG CGTTAAGGGA
GTCTGGGTCT CTCTGGCGTG TTGCAGCACG ATATTGGTGT GTTGGATGAT GTTCGCCCTG
AAAAGGGTAT CGGCACGATT GAATTAG
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| Protein sequence | MSADVSSQDQ ALVNDPIHKL FWRYTIPTIA SMLVTGIYVA IDGMFIGHYL GETGLAGMIL
AYPIGAVLYA IGALFGMGGA ALVSINLGQG EVAKARKILG NTFSLCLISG TVFALFGTRY
SRELLQLLGA EGEVLNSAYD YLFWYFALGY FPIISMAFSA LLRNDGRPGF VTYVLILGGC
LNAVLDWLFI VVFPFGLVGA AIATMISQAV TGLLCLQHFF TANTRLRINW QQMSLKLDHC
LNILRVGLPS FLLSLYLTIV LTLHNMAFLW VGTPIHVAAY GVVSYTEAFF YLIFEGIAFG
TQPIFSFNAG AGRYDRVFKT LKIAFGIALV TAFVGLLFIY IKPFWMVYIF AGDNPQLTPY
AIEGMRLYFW GLPMEGLLLV GASFFQAINC SREASMLTGM KLVLIALVIC LFAWAFGVKG
VWVSLACCST ILVCWMMFAL KRVSARLN
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