Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3331 |
Symbol | ppnK |
ID | 5610278 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 4047710 |
End bp | 4048633 |
Gene Length | 924 bp |
Protein Length | 307 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640934269 |
Product | inorganic polyphosphate/ATP-NAD kinase |
Protein accession | YP_001475063 |
Protein GI | 157376463 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0061] Predicted sugar kinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0000815034 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGGATCA CATTCAAGGT TTCAAGCCCT AGCACTAAGA TAAATATGCC TAAAACGTTT CAATCTATTG GCCTGATTGG CAAGCCTAAC CACCACGGCA CAAACCTGAC CCTAAAACGT TTGCATCACT GGTTAACGAT GCAAGGTTTC GACATCCTGG TAGAGGAGAG AGTCGCTGCC GATATCGGAC CTCAGGCTGT GTCAGTCGAT CTACTCGAGA TAGGCGATAG ATGCGATCTC GCCATCGTCG TTGGCGGTGA TGGCAATATG CTGGGTGCGG CGCGAGTGTT AGCCAGGTTT GATATCGGTG TCATTGGTGT CAACCGTGGC AATCTGGGAT TTCTGACCGA CCTGCCCCCC GACTCATTCG AAGCCGAACT AGGAAAGGTG CTCGATGGAC AATTCGAGAC CGAACACCGG TTTCTGCTCG AAGCCGAGGT GCATCGCCAC GGCCATATGA AAGCGAGCAA CACAGCCGTG AATGAAGCCG TGCTCCACCC GGGAAAAGTG GCTCACATGA TCGAATTTGA GGTCTATATC GATGACGACT TCATGTATAG CCAACGCGCC GACGGCATGA TTGTGTCGAC CCCTACAGGC TCTACCGCCT ATTCACTGTC GGCTGGAGGA GCGATTCTGA CACCGAACCT TGAAGCGCTA ATCCTGGTCC CTATGTTTCC TCATACCCTC TCCTGTCGCC CAATCGTGGT CGATGCCTGT AGCACCATAA AACTGGTGGT ATCACCGGAT AACGGTGATA ACCTGGAGGT GAGTTGTGAT GGTCATGTCA CCTTAGCGGT ACTGCCGGGG GATGAAATTA TCATAAAAAG AAGCCATGAG CGCCTCAGAC TTATTCACCC TAAAGGGCAT AACTATTTCC ACGTATTAAG AAGTAAGCTC GGCTGGGGAA GTAAACTGTT TTAA
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Protein sequence | MGITFKVSSP STKINMPKTF QSIGLIGKPN HHGTNLTLKR LHHWLTMQGF DILVEERVAA DIGPQAVSVD LLEIGDRCDL AIVVGGDGNM LGAARVLARF DIGVIGVNRG NLGFLTDLPP DSFEAELGKV LDGQFETEHR FLLEAEVHRH GHMKASNTAV NEAVLHPGKV AHMIEFEVYI DDDFMYSQRA DGMIVSTPTG STAYSLSAGG AILTPNLEAL ILVPMFPHTL SCRPIVVDAC STIKLVVSPD NGDNLEVSCD GHVTLAVLPG DEIIIKRSHE RLRLIHPKGH NYFHVLRSKL GWGSKLF
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