| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3329 |
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| Symbol | |
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| ID | 5610276 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4045067 |
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| End bp | 4046932 |
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| Gene Length | 1866 bp |
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| Protein Length | 621 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640934267 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_001475061 |
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| Protein GI | 157376461 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0891002 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTTGG ATATATCTAA CTACCCTGTG TTAGCACAGG CTAATACCCC TGATGAGCTA
CGACAGCTCC CTCAAGCAGT ATTGCCTCAA TTGGCAGACG AGCTTAGAGG TTTCCTTTTG
AAATCTGTGG GTAAATCTAG TGGTCACTTC GCTTCAGGGC TTGGAACTGT CGAGCTCACC
GTAGCGCTTC ACTATGTTTA TAACACCCCC TTCGACCGTC TGATTTGGGA TGTAGGCCAC
CAGGCCTACC CACATAAAAT CCTGACTGGT CGCCGTGACA AGATGCACAC CATACGTCAA
AAAGGGGGAA TACACCCTTT CCCTTGGCGT GAAGAGAGTG AGTACGACAC CTTCAGTGTG
GGACACTCAG GTACCTCTAT CAGCGCGGCG CTCGCAATGG CTGTAGCAGC TGAAAAAGAG
CAAGCCGGAC GCAAAGTGGT TTCAGTCATT GGCGATGGTG CCATGACCGG CGGCATGGTG
TTTGAGGCCA TGAACCACGC AGGAGATCTG CACAATGATA TGTTAGTCGT GCTCAACGAC
AACGAGATGT CTATCTCTGA GAATGTCGGT GCGCTGAATA ATCACCTGGC TCAACTTATG
TCGGGACGTT TCTATACTAC GATTCGTGAA AGTAGTAAGA AGGTCCTTGA AGGTATGCCA
GTCATCAAAG AGATGGCAAA GCGTACCGAA GAGCATCTCA AGGGCATGGT GGTTCCCGGC
ACTATGTTTG AAGAGCTGGG CTTTAACTAT ATTGGCCCTA TCGATGGCCA TGATGTTGAT
GCATTGGTCG AAACAATGCG CAATATGCGT AACCTGTCCG GCCCGCAAAT TTTACATATC
ATGACCAAGA AAGGTCGTGG ATATGAGCCG GCAGAGAAAG ATCCCATCGG TTGGCACGCC
GTACCTAAAT TTGATCCCTC GACGTTTGAG AAGCCTGCTT CTAAACCCAG TAACCCAACC
TTTTCACAGG TATTTGGTAA ATGGTTGTGC GATGTCGCCG AGAAAGATGA CAAGGTATTG
GGTATTACAC CAGCCATGCG TGAAGGTTCC GGGATGGTTG AGTTCTCTCA ACGTTTTCCG
AAGCAATATT TCGATGCCGC CATTGCAGAG CAGCACGCAG TCACCTTAGG TGCCGGTTTT
GCTTGTGAAG GGTTAAAGCC CGTAGTGGCT ATCTATTCGA CCTTCCTGCA ACGTGGTTAT
GATCAGCTTA TTCACGATGT CGCGCTACAG AAGTTACCCG TATTATTCGC CATCGACAGA
GGTGGTATTG TCGGTGCCGA CGGCCCCACA CACCAAGGCG CCTTCGATCT TAGCTTTATG
CGTACTGTGC CTAATATGGT CATAATGGCG CCATCGGATG AAAATGAGTG TCGTCAGATG
CTCTATACCG GTTATTGCTA CAGAGAAGGC CCCACCGCAG TTCGCTACCC CAGAGGCAGC
GCGACGGGTG AGCCTCAGGT TGAAGAGATG CAAGCATTAC CCATAGGTAA AGGCTTAATC
AAGCGTCAGG GGCAGAAAGT CGCAATTCTT AACTTCGGTA CTCTGCTTGC CGATGTGTTA
ACCGCCGCCG AATCTATCGA TGCGACGGTT GCCGATATGC GCTTTGTCAA ACCTCTCGAT
GTTGAGTTGG TCAAAGAGCT TGCCAGTTCC CATGACCTGC TCGTTACCGT CGAAGAAAAT
GCCATCATGG GCGGTGCAGG CTCGGGAGTC CTGGAACTTC TGCAGCAACT TAAACAGCCG
ATGCCGGTAC TGCAAATCGG TCTACCCGAT GAGTTTATTA AGCATGGGGC TTCGGGTGAA
ATTCTTGCGG AGCTAAGACT CGATGCTGCG GGTATACTGG AGCAGATTGA AGAGTACTTA
AAGTAG
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| Protein sequence | MSLDISNYPV LAQANTPDEL RQLPQAVLPQ LADELRGFLL KSVGKSSGHF ASGLGTVELT
VALHYVYNTP FDRLIWDVGH QAYPHKILTG RRDKMHTIRQ KGGIHPFPWR EESEYDTFSV
GHSGTSISAA LAMAVAAEKE QAGRKVVSVI GDGAMTGGMV FEAMNHAGDL HNDMLVVLND
NEMSISENVG ALNNHLAQLM SGRFYTTIRE SSKKVLEGMP VIKEMAKRTE EHLKGMVVPG
TMFEELGFNY IGPIDGHDVD ALVETMRNMR NLSGPQILHI MTKKGRGYEP AEKDPIGWHA
VPKFDPSTFE KPASKPSNPT FSQVFGKWLC DVAEKDDKVL GITPAMREGS GMVEFSQRFP
KQYFDAAIAE QHAVTLGAGF ACEGLKPVVA IYSTFLQRGY DQLIHDVALQ KLPVLFAIDR
GGIVGADGPT HQGAFDLSFM RTVPNMVIMA PSDENECRQM LYTGYCYREG PTAVRYPRGS
ATGEPQVEEM QALPIGKGLI KRQGQKVAIL NFGTLLADVL TAAESIDATV ADMRFVKPLD
VELVKELASS HDLLVTVEEN AIMGGAGSGV LELLQQLKQP MPVLQIGLPD EFIKHGASGE
ILAELRLDAA GILEQIEEYL K
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