| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3328 |
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| Symbol | |
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| ID | 5611174 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4044165 |
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| End bp | 4045046 |
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| Gene Length | 882 bp |
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| Protein Length | 293 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640934266 |
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| Product | polyprenyl synthetase |
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| Protein accession | YP_001475060 |
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| Protein GI | 157376460 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0142] Geranylgeranyl pyrophosphate synthase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.271135 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTTAGCCA GAGCCATCTC TCAATATCAG CAACGTGTCG ATGAACAAAT TAAATCTATT
ATCGACTCTC AAGCTACCAC AGATCTGAAA TTACAAGCGG CCATGAAACA TGGGGCTTTA
ATTGGTGGTA AGCGTATCAG GCCATTTTTG GTCTATGCCA TCGGCGATAT GCTGAATGTT
GCGCCAGAAA AACTCGACGC CTGCGCGGCC GCCATCGAAT GTGTTCATGC TTATTCATTA
ATTCATGATG ATCTTCCGGC TATGGACGAT GATGCTCTGC GCCGGGGGCA GCCAACTGTT
CATATTGCCT TCGATGAAGC CACCGCTATT TTAGCGGGTG ATGCATTGCA AGCCTTAGCC
TTCGAAAGCA TCTGTGAGCC CATAAATGGT ATTACACCAA GCCAAAATCT GGCCATGGTG
AGAGCCTTAG CTAAAGCCTC AGGATATTCC GGGATGTGTG GCGGTCAAGC CATGGATCTC
AATGCAACCG ACAAGCAGAT CGATCTAGCG ACACTGACCA AGCTGCATAG ATTAAAAACC
GGCGCCCTGA TCCGTTGCGC AGTTGAACTA CCGATGATCG CAGCGGCTGT CACTGTAGAA
GAGCAAAATT TGTTGATGGA TTTTGCTGAC GCCATTGGGC TGGCATTTCA AGTGCAGGAT
GACGTACTCG ATATCATCGC CAGTACCGAA GAGCTGGGGA AACCTCAGGG TTCCGATTGT
GACTCCAACA AGAGCACCTA TCCCAGACTA CTGGGATTAG AAGGAGCACA AGCCACTGCC
CAAAGTTTGA TTGATGATGC CCTATCAGCG CTGACAAAAT TACCATACAA TAGTCAGCTA
ATTGCCGAAT TCGCCCGTTT TATCATTGAG CGAAGAGTAT AA
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| Protein sequence | MLARAISQYQ QRVDEQIKSI IDSQATTDLK LQAAMKHGAL IGGKRIRPFL VYAIGDMLNV
APEKLDACAA AIECVHAYSL IHDDLPAMDD DALRRGQPTV HIAFDEATAI LAGDALQALA
FESICEPING ITPSQNLAMV RALAKASGYS GMCGGQAMDL NATDKQIDLA TLTKLHRLKT
GALIRCAVEL PMIAAAVTVE EQNLLMDFAD AIGLAFQVQD DVLDIIASTE ELGKPQGSDC
DSNKSTYPRL LGLEGAQATA QSLIDDALSA LTKLPYNSQL IAEFARFIIE RRV
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