| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3322 |
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| Symbol | |
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| ID | 5610561 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4038502 |
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| End bp | 4039413 |
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| Gene Length | 912 bp |
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| Protein Length | 303 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640934260 |
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| Product | DNA-binding transcriptional activator GcvA |
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| Protein accession | YP_001475054 |
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| Protein GI | 157376454 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000222387 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTAGAC GTTTACCGCC ATTAAATGCA GTGAAAGCAT TCGAAGCAGC TGCGAGGCAT
CTAAGCTTTA CCCGGGCAGC CGAAGAGCTC TTCGTAACTC AGGCTGCGGT GAGTCATCAA
ATAAAGGCTT TAGAAGAGTA TTTAGGCCTG AAATTATTCC GTCGAAAGAA CCGCTCTCTG
CTATTAACTG AAGAGGGGCA GGGGTACTTT TTAGATATCA AAGACATCTT TGTTCAGTTG
GCCGATGCAA CAGACCGACT TCTTGCCAGA AGTGCCATAG GTTCACTGAC AGTCAGCACT
TCACCCAGTT TTGCTATTCA ATGGTTAGTG CCTCGTTTGG CCAAATTCAG TGAGAATAAC
CCCGATATCG ATGTTCGAAT TAAGGCCGTC GATAATGAAG ATAGCTCGTT GACTGATGAT
GTCGATGTTG CCATCTATTA CGGACAGGGG AGTTGGGCCG GATTAAGAGC CGATAAGTTA
AAAAATGAGG TGTTAATTCC CGTTTGTTCG CCCATGTTAC TCAATGGTCC CAAACCACTG
GAGAAACCCA GTGATCTTAA AAATCATACG CTTTTACATG ATATGAGTCG CCATGATTGG
CAGGCGTGGT TTAGGCAATG TGGGATTAAT GATATTAATG TGAATCAGGG GCCCATATTT
AGTCATTCTT CATTAGTCCT GCAAGCGGCG GCTCATGGAC AAGGTGTTGC GCTGGGTTAT
AGCGTACTTG CCAGGCCCGA TATTAAGGCG GGCAGACTGG TTTGCCCCTT TCAGGAGGTA
TTGGTGAGTA AGAATGCTTA CTACTTGGTT TGTCAGCAAA ATCATGCAGA TATAGGTAAG
GTTGCGGCCT TCAGAGAGTG GATGCTAGAT ATGTTTGAAG AGGAGTCTCG CAGTGAGCTA
CTTCCTGGTT AA
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| Protein sequence | MSRRLPPLNA VKAFEAAARH LSFTRAAEEL FVTQAAVSHQ IKALEEYLGL KLFRRKNRSL
LLTEEGQGYF LDIKDIFVQL ADATDRLLAR SAIGSLTVST SPSFAIQWLV PRLAKFSENN
PDIDVRIKAV DNEDSSLTDD VDVAIYYGQG SWAGLRADKL KNEVLIPVCS PMLLNGPKPL
EKPSDLKNHT LLHDMSRHDW QAWFRQCGIN DINVNQGPIF SHSSLVLQAA AHGQGVALGY
SVLARPDIKA GRLVCPFQEV LVSKNAYYLV CQQNHADIGK VAAFREWMLD MFEEESRSEL
LPG
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