| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3319 |
|---|
| Symbol | |
|---|
| ID | 5610481 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 4036172 |
|---|
| End bp | 4037254 |
|---|
| Gene Length | 1083 bp |
|---|
| Protein Length | 360 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640934257 |
|---|
| Product | putative RNA 2'-O-ribose methyltransferase |
|---|
| Protein accession | YP_001475051 |
|---|
| Protein GI | 157376451 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2933] Predicted SAM-dependent methyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.045342 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.821385 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTAACC TATTTTTGTT TTGCCGTGCA GGCTATGAGA AAGAGTGTGC CGCTGAGATA
CAGCATCGCG CGGCTGAACT TGATATCGGT GGTTTTGTTA AAACCAATAA AAACGATGCT
TATGTGATTT TTCAGTGCTT TCAAGCCGGT GATGCGGCTG TCTTAGCGCA AAAGATCAAA
TTGGATTCTC TGATCTTTGC CAGACAGATG TTTGCGGCAA AAGCATTGCT GAAAAACCTG
CCGGAAAATG ATCGGATCAC GCCAATCATG GAAGCGTTAT CCGACGTTAG AAATGCCGGC
GAGCTACGAG TCGAGACACC GGATACCGAT GCAGCAAAAG AACGAACTAC TTTTTGCCGT
AAATTTACTG TCCCATTAAG ACAGAAGTTG AAGAACTCTG GAAACTTACT TAAAAAAGAG
AGTAGCAGTC GCCCAATTAT TCATGTCTGT TTTGTGGCTT CAGGAACGGC TTATGTTGGT
TTTTCTTTTA GCAATAATAG TTCTCCCTAT CCAATGGGGA TCCCAAGACT GAAAATGGCC
AGCGATGCAC CTAGCCGTTC AACACTTAAA CTCGATGAAG CATTTATCCA CTTTATTCCA
GAAGAGGAAA AAGAGCTGAG ATTAAGCAGC GGCATGAATG CGGTCGATCT TGGCGCCTGT
CCTGGAGGTT GGACATATCA GCTTGTTCGT CGTGGTATGT TTGTCGCCGC AATCGATAAT
GGAGCGATGG ATGAAGGCTT AATGGAGACG GGGCAGGTTA AGCATTACCA GGCCGATGGT
TTTCGTTTCG AGCCGCCACG TAAGAATATC TATTGGTTGG TCTGCGACAT GATTGAGAAG
CCTTCGCGTG TGGCTGAGTT GATTGAAGCC TGGGCGATCA ATGGCTGGTT TAAAGAGGCG
ATGTTTAATC TTAAATTGCC TATGAAGAGT CGCTATCAAG ACGTGACGAC TATATTAGAG
ACCATGGCGA CTGTGCTTAA AGAGAACGAG ATAAAGAACT TCTCGATAAA ATGTAAGCAC
CTTTATCATG ACCGTGATGA GGTGACGGTT TACCTGAGTT TAAATCCGAC TCAGGTTAGC
TAA
|
|---|
| Protein sequence | MINLFLFCRA GYEKECAAEI QHRAAELDIG GFVKTNKNDA YVIFQCFQAG DAAVLAQKIK
LDSLIFARQM FAAKALLKNL PENDRITPIM EALSDVRNAG ELRVETPDTD AAKERTTFCR
KFTVPLRQKL KNSGNLLKKE SSSRPIIHVC FVASGTAYVG FSFSNNSSPY PMGIPRLKMA
SDAPSRSTLK LDEAFIHFIP EEEKELRLSS GMNAVDLGAC PGGWTYQLVR RGMFVAAIDN
GAMDEGLMET GQVKHYQADG FRFEPPRKNI YWLVCDMIEK PSRVAELIEA WAINGWFKEA
MFNLKLPMKS RYQDVTTILE TMATVLKENE IKNFSIKCKH LYHDRDEVTV YLSLNPTQVS
|
|---|
| |