| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3318 |
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| Symbol | |
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| ID | 5610480 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4034985 |
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| End bp | 4035992 |
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| Gene Length | 1008 bp |
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| Protein Length | 335 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640934256 |
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| Product | isocitrate dehydrogenase |
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| Protein accession | YP_001475050 |
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| Protein GI | 157376450 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
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| TIGRFAM ID | [TIGR00175] isocitrate dehydrogenase, NAD-dependent, mitochondrial type
[TIGR00183] isocitrate dehydrogenase, NADP-dependent, prokaryotic type
[TIGR02088] isopropylmalate/isohomocitrate dehydrogenases |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.314377 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCAAAAA GAACTATAAC CGTGATCCCT GGTGATGGGA TTGGACCAAG CATTATCGAT
GCAGCCATAA AAATTCTTGA TAAAGCCGGT TGCGATTTTG AATATGAATT TGCCGATGCA
GGTTTAGCCG CGCTTGAAAA GCAAGGTGAG CTTTTACCCC AGCGTACCCT CGATATGATC
GAGAAGAACC GTATTACTCT GAAAGGCCCA TTGACTACGC CTGTTGGTGA GGGCTTTACC
TCTATCAACG TATCATTGCG TAAGAAATTC AGCCTGTACG CGAATGTTCG CCCGGTTCTC
TCTTTCAAAG GGACTCAGGC TCGATACGAT AATATCGATA TCATTACCGT TCGTGAAAAC
ACCGAAGGTA TGTATTCGGG TCTGGGCCAG ACGGTCTCAG ATGATGGCGC AACAGCTGAA
GCGACAAGTA TTATCACTCG TCAGGGTGCC GAACAGATCA CAACTTTCGC TTATGAACTC
GCTCGTAAAG AGAATCGTAA GAAAGTGACT ATCGTTCATA AGGCTAACAT CATGAAGTCG
ACATCAGGAC TCTTCCTGAA AGTCGCCCGT GAAGTCAGCC AACGTTACCC TGACATCATC
ACCGAAGAGA TGATTGTCGA TGCGACGTGT ATGAAACTGG TCATGAACCC TGAAAACTTT
GACGTTATGG TAACGACAAA CCTTTTCGGT GACATTCTTT CTGATCTCTG TGCAGGTTTA
GTCGGTGGCT TAGGTATGGC TCCGGGTGCC AACATAGGTA AAGATGCGGC AATTTTTGAA
GCGGTTCATG GTAGTGCGCC CGATATTGCC GGTAAAAACC TGGCAAACCC AACATCGGTT
ATTCTGGCTT CGATCCAGAT GCTTGAATAT TTAGGTATGG CTGATAAAGC GGAGAGCATC
CGCGCCGCCG TTACCGCAGT GATTGCCGAA GGCGACCGTA CTACACGCGA CTTGGGCGGC
ACCCATGGTA CGACCGATTT CACACAAGCT GTGATTGAAC GATTATAA
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| Protein sequence | MSKRTITVIP GDGIGPSIID AAIKILDKAG CDFEYEFADA GLAALEKQGE LLPQRTLDMI
EKNRITLKGP LTTPVGEGFT SINVSLRKKF SLYANVRPVL SFKGTQARYD NIDIITVREN
TEGMYSGLGQ TVSDDGATAE ATSIITRQGA EQITTFAYEL ARKENRKKVT IVHKANIMKS
TSGLFLKVAR EVSQRYPDII TEEMIVDATC MKLVMNPENF DVMVTTNLFG DILSDLCAGL
VGGLGMAPGA NIGKDAAIFE AVHGSAPDIA GKNLANPTSV ILASIQMLEY LGMADKAESI
RAAVTAVIAE GDRTTRDLGG THGTTDFTQA VIERL
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